C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381410 SNX18-002 ENSG00000178996 9606 + 5:54517763-54546585 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381410
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381410 9.541±0.00 6.467±0.00 2.685±0.00 3.884±1.34 6.566±3.05 6.244±3.26 2.343±1.24 5.484±2.76 5.570±1.43 6.348±0.03 1.657±1.14 6.545±4.19 9.344±0.89 6.266±2.82

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 IMP mitotic cytokinesis
GO:0005515 IPI:IEA protein binding
GO:0005546 IDA phosphatidylinositol-4,5-bisphosphate binding
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0006897 IDA endocytosis
GO:0007067 IEA mitotic nuclear division
GO:0015031 IEA protein transport
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016197 IMP endosomal transport
GO:0030136 IDA clathrin-coated vesicle
GO:0031234 IDA extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 IEA phosphatidylinositol binding
GO:0036089 IMP cleavage furrow formation
GO:0043547 IDA positive regulation of GTPase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109241 Snx18-201 protein_coding Mus_musculus 0 2935

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