C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179750 APOBEC3B 9606 + 22:38982347-38992804 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333467 APOBEC3B-001 38982409-38992784 protein_coding
  ENST00000335760 APOBEC3B-005 38982406-38992761 nonsense_mediated_decay
  ENST00000402182 APOBEC3B-002 38982399-38992804 protein_coding
  ENST00000407298 APOBEC3B-003 38982347-38992546 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000333467ENST00000335760ENST00000402182ENST00000407298
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000333467 0.237±0.00 N/A N/A N/A N/A 0.118±0.00 0.150±0.00 0.176±0.00 N/A N/A 1.931±0.82 N/A
ENST00000335760 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.439±0.00 N/A 0.294±0.00
ENST00000402182 N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A 0.169±0.07 1.252±0.00 N/A
ENST00000407298 N/A 0.317±0.00 0.106±0.00 0.074±0.00 0.331±0.00 0.648±0.00 0.104±0.08 N/A 0.437±0.00 0.271±0.10 2.825±0.00 0.360±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005634 IDA nucleus
GO:0008152 IEA metabolic process
GO:0008270 IEA zinc ion binding
GO:0010529 IDA negative regulation of transposition
GO:0016814 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0044822 IDA poly(A) RNA binding
GO:0045087 IEA innate immune response
GO:0047844 IMP deoxycytidine deaminase activity
GO:0051607 IDA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000009585 Apobec3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 protein_coding Mus_musculus

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