C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009585 Apobec3 10090 + 15:79891659-79915906 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023054 Apobec3-004 79895023-79907906 protein_coding
  ENSMUST00000109620 Apobec3-201 79892408-79908429 protein_coding
  ENSMUST00000165537 Apobec3-202 79892408-79908429 protein_coding
  ENSMUST00000175714 Apobec3-001 79892403-79907918 protein_coding
  ENSMUST00000175752 Apobec3-002 79892448-79908086 protein_coding
  ENSMUST00000175801 Apobec3-009 79897823-79905918 retained_intron
  ENSMUST00000175827 Apobec3-008 79906123-79907091 retained_intron
  ENSMUST00000175849 Apobec3-010 79892449-79896028 retained_intron
  ENSMUST00000176325 Apobec3-006 79892449-79908436 protein_coding
  ENSMUST00000176644 Apobec3-003 79900202-79907920 retained_intron
  ENSMUST00000176823 Apobec3-013 79892058-79897764 processed_transcript
  ENSMUST00000176868 Apobec3-012 79892411-79905492 nonsense_mediated_decay
  ENSMUST00000176904 Apobec3-011 79895261-79898185 protein_coding
  ENSMUST00000177006 Apobec3-005 79892442-79907369 nonsense_mediated_decay
  ENSMUST00000177098 Apobec3-007 79892455-79915906 nonsense_mediated_decay
  ENSMUST00000177350 Apobec3-015 79891659-79905547 protein_coding
  ENSMUST00000177483 Apobec3-014 79891694-79905600 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartLiverMuscleOvaryENSMUST00000165537ENSMUST00000175752ENSMUST00000175849ENSMUST00000176325ENSMUST00000176644ENSMUST00000177098
Transcript ID Adipose Bladder Breast Colon Heart Liver Muscle Ovary
ENSMUST00000165537 N/A N/A 14.344±0.00 N/A N/A 9.691±0.00 N/A N/A
ENSMUST00000175752 N/A N/A N/A N/A N/A 27.930±9.04 N/A 2.145±0.00
ENSMUST00000175849 54.949±11.29 N/A N/A 60.467±12.72 N/A 19.694±13.58 9.876±1.24 42.432±4.85
ENSMUST00000176325 4.780±0.00 N/A 12.921±3.02 N/A N/A N/A N/A 9.582±1.10
ENSMUST00000176644 N/A N/A 12.898±0.00 N/A N/A N/A N/A N/A
ENSMUST00000177098 8.198±0.00 15.620±1.01 24.102±2.13 10.849±2.73 2.598±0.00 7.869±0.48 N/A 7.717±2.84

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IGI hematopoietic progenitor cell differentiation
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008152 IEA metabolic process
GO:0008270 IEA zinc ion binding
GO:0010529 IDA negative regulation of transposition
GO:0016814 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0045071 IDA negative regulation of viral genome replication
GO:0045087 IEA innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000128394 APOBEC3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F protein_coding Homo_sapiens
ENSG00000179750 APOBEC3B apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B protein_coding Homo_sapiens
ENSG00000239713 APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G protein_coding Homo_sapiens
ENSG00000243811 APOBEC3D apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D protein_coding Homo_sapiens
ENSG00000244509 APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C protein_coding Homo_sapiens

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