C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 66
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000180376 CCDC66 9606 + 3:56557161-56621818 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326595 CCDC66-002 56557188-56621762 protein_coding
  ENST00000341455 CCDC66-005 56557219-56621808 nonsense_mediated_decay
  ENST00000394672 CCDC66-001 56557173-56621797 protein_coding
  ENST00000422222 CCDC66-008 56557161-56617301 protein_coding
  ENST00000422788 CCDC66-010 56557219-56565205 nonsense_mediated_decay
  ENST00000434467 CCDC66-003 56557210-56570746 nonsense_mediated_decay
  ENST00000439445 CCDC66-009 56557163-56564139 nonsense_mediated_decay
  ENST00000442522 CCDC66-004 56557228-56570671 processed_transcript
  ENST00000459746 CCDC66-011 56557191-56564125 processed_transcript
  ENST00000460838 CCDC66-021 56557163-56566739 processed_transcript
  ENST00000468108 CCDC66-017 56593712-56615417 retained_intron
  ENST00000469966 CCDC66-020 56557707-56564156 processed_transcript
  ENST00000471681 CCDC66-015 56557211-56621808 nonsense_mediated_decay
  ENST00000472582 CCDC66-022 56557203-56566706 processed_transcript
  ENST00000473322 CCDC66-012 56563516-56565177 retained_intron
  ENST00000476142 CCDC66-007 56617101-56621762 retained_intron
  ENST00000480884 CCDC66-006 56615869-56621818 retained_intron
  ENST00000482673 CCDC66-014 56566661-56572910 retained_intron
  ENST00000484441 CCDC66-018 56566951-56571379 retained_intron
  ENST00000484623 CCDC66-013 56558845-56615153 processed_transcript
  ENST00000487739 CCDC66-019 56558855-56561222 retained_intron
  ENST00000494672 CCDC66-016 56566783-56593061 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartKidneyMuscleOvaryPlacentaENST00000326595ENST00000341455ENST00000394672ENST00000484623
Transcript ID Bladder Colon Heart Kidney Muscle Ovary Placenta
ENST00000326595 1.081±0.00 2.318±0.00 N/A 3.145±0.00 N/A 2.299±0.00 N/A
ENST00000341455 N/A N/A N/A N/A 1.307±0.00 N/A N/A
ENST00000394672 N/A 2.252±0.00 1.004±0.00 N/A N/A N/A N/A
ENST00000484623 N/A N/A N/A N/A N/A N/A 5.699±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UE CIL_0007UE_0001 VISTA 3:56468385-57070064

Gene Ontology
GO IDEvidence TypeGO Description
GO:0046548 IEA retinal rod cell development
GO:0060060 IEA post-embryonic retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017771 CCDC66 coiled-coil domain containing 66 protein_coding Danio_rerio
ENSMUSG00000046753 Ccdc66 coiled-coil domain containing 66 protein_coding Mus_musculus

Loading