C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: beta-1,4-N-acetyl-galactosaminyl transferase 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182272 B4GALNT4 9606 + 11:369796-382116 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000329962 B4GALNT4-001 369804-382116 protein_coding
  ENST00000524443 B4GALNT4-003 375461-376108 retained_intron
  ENST00000526584 B4GALNT4-004 379982-380951 nonsense_mediated_decay
  ENST00000530717 B4GALNT4-002 369796-372807 retained_intron
  ENST00000534778 B4GALNT4-005 380292-382109 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329962ENST00000524443ENST00000526584ENST00000534778
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329962 0.044±0.00 0.515±0.00 4.865±4.42 0.673±0.65 0.039±0.00 0.187±0.00 0.084±0.00 N/A 0.060±0.00 0.262±0.00 15.159±13.42 0.075±0.07 1.077±0.06
ENST00000524443 N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A 0.749±0.00 0.348±0.00 N/A
ENST00000526584 N/A N/A N/A N/A N/A N/A N/A N/A 0.408±0.00 N/A 26.583±0.00 0.581±0.00 1.922±0.00
ENST00000534778 0.023±0.00 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UH CIL_0002UH_0001 CGP 11:369796-404908

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0008376 IDA:IEA acetylgalactosaminyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0032580 IEA Golgi cisterna membrane
GO:0033842 IEA N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046150 b4galnt4a beta-1,4-N-acetyl-galactosaminyl transferase 4a protein_coding Danio_rerio
ENSDARG00000076701 B4GALNT4 (2 of 2) beta-1,4-N-acetyl-galactosaminyl transferase 4 protein_coding Danio_rerio
ENSMUSG00000055629 B4galnt4 beta-1,4-N-acetyl-galactosaminyl transferase 4 protein_coding Mus_musculus

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