C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002UH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182272-ENSG00000184363 CGP 9606 11:369796-404908
GeneTranscriptPositionBiotype
ENSG00000182272 (B4GALNT4)
beta-1,4-N-acetyl-galactosaminyl transferase 4 		ENST00000329962 (B4GALNT4-001) 369804-382116 protein_coding
ENST00000524443 (B4GALNT4-003) 375461-376108 retained_intron
ENST00000526584 (B4GALNT4-004) 379982-380951 nonsense_mediated_decay
ENST00000530717 (B4GALNT4-002) 369796-372807 retained_intron
ENST00000534778 (B4GALNT4-005) 380292-382109 nonsense_mediated_decay
ENSG00000184363 (PKP3)
plakophilin 3 		ENST00000331563 (PKP3-001) 394217-404908 protein_coding
ENST00000524646 (PKP3-008) 397372-397776 retained_intron
ENST00000525642 (PKP3-010) 404087-404681 protein_coding
ENST00000526971 (PKP3-009) 397630-400260 retained_intron
ENST00000527442 (PKP3-004) 393463-397329 protein_coding
ENST00000528036 (PKP3-005) 394145-397438 protein_coding
ENST00000530695 (PKP3-011) 396151-396985 processed_transcript
ENST00000531857 (PKP3-006) 394243-397312 protein_coding
ENST00000533069 (PKP3-007) 394243-396915 retained_intron
ENST00000533249 (PKP3-003) 393449-397655 protein_coding
ENST00000534401 (PKP3-002) 392614-397198 protein_coding
CIL_0002UH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055629-ENSMUSG00000054065 CGP 10090 7:141061274-141090510
GeneTranscriptPositionBiotype
ENSMUSG00000054065 (Pkp3)
plakophilin 3 		ENSMUST00000066873 (Pkp3-001) 141079760-141090510 protein_coding
ENSMUST00000106039 (Pkp3-002) 141078218-141090510 protein_coding
ENSMUST00000159253 (Pkp3-010) 141088208-141088848 retained_intron
ENSMUST00000159375 (Pkp3-004) 141079147-141082646 protein_coding
ENSMUST00000160356 (Pkp3-005) 141089861-141090509 protein_coding
ENSMUST00000160403 (Pkp3-003) 141088146-141090507 retained_intron
ENSMUST00000160615 (Pkp3-009) 141087761-141088877 retained_intron
ENSMUST00000160869 (Pkp3-008) 141079780-141082695 nonsense_mediated_decay
ENSMUST00000161142 (Pkp3-007) 141089411-141089916 retained_intron
ENSMUST00000163041 (Pkp3-006) 141079775-141083121 protein_coding
ENSMUSG00000055629 (B4galnt4)
beta-1,4-N-acetyl-galactosaminyl transferase 4 		ENSMUST00000048002 (B4galnt4-201) 141061274-141072119 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002UH_0001ENSG00000182272ENST00000329962ENST00000524443ENST00000526584ENST00000530717ENST00000534778ENSG00000184363ENST00000331563ENST00000524646ENST00000525642ENST00000526971ENST00000527442ENST00000528036ENST00000530695ENST00000531857ENST00000533069ENST00000533249ENST00000534401CIL_0002UH_0002ENSMUSG00000054065ENSMUST00000066873ENSMUST00000106039ENSMUST00000159253ENSMUST00000159375ENSMUST00000160356ENSMUST00000160403ENSMUST00000160615ENSMUST00000160869ENSMUST00000161142ENSMUST00000163041ENSMUSG00000055629ENSMUST00000048002
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002UH_0001ENSG00000182272ENST00000329962ENST00000524443ENST00000526584ENST00000534778ENSG00000184363ENST00000331563ENST00000525642ENST00000526971ENST00000531857CIL_0002UH_0002ENSMUSG00000054065ENSMUST00000066873ENSMUST00000106039ENSMUST00000159253ENSMUST00000160356ENSMUST00000160403ENSMUST00000160615ENSMUST00000161142ENSMUST00000163041ENSMUSG00000055629ENSMUST00000048002
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000182272 ENST00000329962 0.044±0.00 0.515±0.00 N/A 4.865±4.42 0.673±0.65 0.039±0.00 0.187±0.00 0.084±0.00 N/A 0.060±0.00 0.262±0.00 15.159±13.42 0.075±0.07 1.077±0.06
ENST00000524443 N/A N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A 0.749±0.00 0.348±0.00 N/A
ENST00000526584 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.408±0.00 N/A 26.583±0.00 0.581±0.00 1.922±0.00
ENST00000530717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534778 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A
ENSG00000184363 ENST00000331563 N/A N/A N/A N/A 2.192±0.94 N/A N/A N/A 0.136±0.00 3.277±0.00 0.122±0.00 11.462±6.98 27.197±7.56 N/A
ENST00000524646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525642 0.752±0.00 N/A N/A N/A N/A 2.595±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526971 N/A N/A N/A 0.842±0.00 2.675±0.00 3.746±0.00 N/A N/A 0.201±0.00 4.712±0.00 N/A N/A N/A N/A
ENST00000527442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531857 N/A N/A N/A N/A N/A N/A N/A N/A 1.131±0.00 N/A N/A N/A N/A N/A
ENST00000533069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000054065 ENSMUST00000066873 3.858±0.25 0.032±0.00 7.979±1.96 0.196±0.13 7.863±3.37 41.143±4.35 0.083±0.00 5.247±2.12 0.240±0.13 9.426±1.92 0.171±0.00 2.713±1.53 11.493±10.52 N/A
ENSMUST00000106039 N/A N/A N/A 0.196±0.08 N/A N/A N/A N/A 0.096±0.00 2.753±0.41 0.181±0.04 N/A 1.674±0.00 N/A
ENSMUST00000159253 N/A 0.524±0.00 N/A N/A N/A N/A 0.237±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160356 N/A N/A N/A N/A 7.386±0.00 N/A N/A N/A N/A N/A 0.214±0.00 1.522±0.01 75.004±0.00 N/A
ENSMUST00000160403 0.434±0.00 0.272±0.04 N/A 0.068±0.00 5.084±2.21 N/A 0.292±0.23 N/A 0.346±0.08 N/A 0.426±0.55 0.687±0.14 7.124±1.59 N/A
ENSMUST00000160615 0.619±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.175±0.03 N/A N/A N/A
ENSMUST00000160869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161142 N/A N/A N/A N/A N/A N/A 0.463±0.22 N/A 0.378±0.00 N/A 0.141±0.04 N/A N/A N/A
ENSMUST00000163041 N/A 0.202±0.09 N/A N/A N/A 20.789±0.00 N/A N/A N/A N/A N/A 2.073±0.26 N/A N/A
ENSMUSG00000055629 ENSMUST00000048002 0.592±0.51 0.520±0.28 0.136±0.00 24.814±7.60 0.417±0.15 0.979±0.42 0.029±0.01 0.053±0.03 0.181±0.18 0.078±0.02 0.100±0.05 0.792±0.41 0.729±0.54 4.315±2.46

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