C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LysM, putative peptidoglycan-binding, domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183060 LYSMD4 9606 - 15:99715697-99733561 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000332728 LYSMD4-201 99727401-99733444 protein_coding
  ENST00000344791 LYSMD4-001 99727405-99733421 protein_coding
  ENST00000378904 LYSMD4-202 99716402-99716797 protein_coding
  ENST00000409796 LYSMD4-005 99727405-99733339 protein_coding
  ENST00000450512 LYSMD4-002 99729632-99733437 protein_coding
  ENST00000479791 LYSMD4-004 99727409-99732009 retained_intron
  ENST00000484050 LYSMD4-006 99729498-99733561 processed_transcript
  ENST00000493256 LYSMD4-007 99729382-99733361 retained_intron
  ENST00000496108 LYSMD4-003 99715701-99733444 processed_transcript
  ENST00000545021 LYSMD4-203 99727401-99733444 protein_coding
  ENST00000604213 LYSMD4-008 99715697-99733391 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000496108
Transcript ID Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000496108 5.330±0.00 7.859±0.00 6.558±0.00 19.169±0.00 6.914±0.00 3.014±0.00 9.911±0.00 10.408±0.00 7.651±0.00 4.101±0.00 6.180±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079Q CIL_00079Q_0002 CGP 15:99251362-99716466

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068702 lysmd4 LysM, putative peptidoglycan-binding, domain containing 4 protein_coding Danio_rerio
ENSMUSG00000043831 Lysmd4 LysM, putative peptidoglycan-binding, domain containing 4 protein_coding Mus_musculus

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