C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00079Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000057477-ENSDARG00000057527 CGP 7955 7:16389152-16481531
GeneTranscriptPositionBiotype
ENSDARG00000057477 (lrrc28)
leucine rich repeat containing 28 		ENSDART00000080160 (lrrc28-201) 16389152-16425885 protein_coding
ENSDARG00000057527 (MEF2A (2 of 2))
myocyte enhancer factor 2A 		ENSDART00000080190 (MEF2A (2 of 2)-201) 16446601-16481531 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00079Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168904-ENSG00000068305 CGP 9606 15:99251362-99716466
GeneTranscriptPositionBiotype
ENSG00000068305 (MEF2A)
myocyte enhancer factor 2A 		ENST00000338042 (MEF2A-201) 99565928-99716422 protein_coding
ENST00000354410 (MEF2A-001) 99565700-99716466 protein_coding
ENST00000449277 (MEF2A-004) 99565990-99716406 protein_coding
ENST00000557785 (MEF2A-002) 99565980-99713782 protein_coding
ENST00000557942 (MEF2A-005) 99566087-99716424 protein_coding
ENST00000558049 (MEF2A-010) 99565987-99645621 protein_coding
ENST00000558812 (MEF2A-003) 99565928-99713324 protein_coding
ENST00000558856 (MEF2A-011) 99565928-99657531 processed_transcript
ENST00000558983 (MEF2A-012) 99565980-99671562 retained_intron
ENST00000559036 (MEF2A-006) 99565969-99645831 retained_intron
ENST00000559903 (MEF2A-009) 99566483-99645739 protein_coding
ENST00000560493 (MEF2A-008) 99565417-99645761 protein_coding
ENST00000561125 (MEF2A-007) 99706595-99715962 retained_intron
ENSG00000168904 (LRRC28)
leucine rich repeat containing 28 		ENST00000301981 (LRRC28-001) 99251362-99390729 protein_coding
ENST00000331450 (LRRC28-002) 99251541-99386296 protein_coding
ENST00000447360 (LRRC28-003) 99251505-99386296 protein_coding
ENST00000558172 (LRRC28-010) 99251515-99361509 protein_coding
ENST00000558248 (LRRC28-013) 99320603-99352527 retained_intron
ENST00000558471 (LRRC28-009) 99251463-99361511 nonsense_mediated_decay
ENST00000558500 (LRRC28-020) 99251493-99297338 processed_transcript
ENST00000558771 (LRRC28-016) 99286702-99352457 processed_transcript
ENST00000558861 (LRRC28-007) 99251811-99334047 protein_coding
ENST00000558879 (LRRC28-008) 99251362-99386202 protein_coding
ENST00000558890 (LRRC28-012) 99326513-99363393 retained_intron
ENST00000558911 (LRRC28-015) 99334083-99354000 processed_transcript
ENST00000559399 (LRRC28-017) 99251386-99334130 processed_transcript
ENST00000559433 (LRRC28-021) 99251460-99363178 nonsense_mediated_decay
ENST00000559774 (LRRC28-014) 99333923-99355719 processed_transcript
ENST00000559819 (LRRC28-004) 99333615-99390727 retained_intron
ENST00000560213 (LRRC28-005) 99251449-99256356 retained_intron
ENST00000560236 (LRRC28-018) 99363225-99388269 nonsense_mediated_decay
ENST00000560483 (LRRC28-011) 99360996-99363124 retained_intron
ENST00000561253 (LRRC28-022) 99251486-99333978 nonsense_mediated_decay
ENST00000561276 (LRRC28-006) 99251520-99386035 protein_coding
ENST00000561431 (LRRC28-019) 99384294-99386295 processed_transcript
ENSG00000201724 (Y_RNA)
Y RNA 		ENST00000364854 (Y_RNA.1-490) 99681786-99681877 misc_RNA
ENSG00000241562 (RPL7P5)
ribosomal protein L7 pseudogene 5 		ENST00000471472 (RPL7P5-001) 99551382-99552117 processed_pseudogene
ENSG00000259228 (HNRNPA1P62)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 62 		ENST00000559372 (HNRNPA1P62-001) 99284625-99285576 processed_pseudogene
ENSG00000259257 (RP11-616M17.1)
 ENST00000558361 (RP11-616M17.1-001) 99337857-99338481 processed_pseudogene
ENSG00000259341 (RP11-20G13.1)
 ENST00000560103 (RP11-20G13.1-001) 99427009-99431028 lincRNA
ENSG00000259590 (RP11-20G13.3)
 ENST00000561362 (RP11-20G13.3-001) 99395179-99396593 lincRNA
ENSG00000259706 (HSP90B2P)
heat shock protein 90kDa beta (Grp94), member 2, pseudogene 		ENST00000559111 (HSP90B2P-001) 99257632-99260015 processed_pseudogene
ENSG00000259760 (RP11-20G13.2)
 ENST00000559569 (RP11-20G13.2-001) 99396613-99401315 antisense
ENSG00000264771 (AC022819.1)
 ENST00000581052 (AC022819.1-201) 99257539-99257670 miRNA
ENSG00000274294 (RP11-20G13.5)
 ENST00000621331 (RP11-20G13.5-001) 99416584-99417204 lincRNA
ENSG00000279846 (RP11-20G13.4)
 ENST00000623238 (RP11-20G13.4-001) 99497812-99498375 TEC

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00079Q_0001ENSDARG00000057477ENSDART00000080160ENSDARG00000057527ENSDART00000080190CIL_00079Q_0002ENSG00000068305ENST00000338042ENST00000354410ENST00000449277ENST00000557785ENST00000557942ENST00000558049ENST00000558812ENST00000558856ENST00000558983ENST00000559036ENST00000559903ENST00000560493ENST00000561125ENSG00000168904ENST00000301981ENST00000331450ENST00000447360ENST00000558172ENST00000558248ENST00000558471ENST00000558500ENST00000558771ENST00000558861ENST00000558879ENST00000558890ENST00000558911ENST00000559399ENST00000559433ENST00000559774ENST00000559819ENST00000560213ENST00000560236ENST00000560483ENST00000561253ENST00000561276ENST00000561431ENSG00000201724ENST00000364854ENSG00000241562ENST00000471472ENSG00000259228ENST00000559372ENSG00000259257ENST00000558361ENSG00000259341ENST00000560103ENSG00000259590ENST00000561362ENSG00000259706ENST00000559111ENSG00000259760ENST00000559569ENSG00000264771ENST00000581052ENSG00000274294ENST00000621331ENSG00000279846ENST00000623238
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00079Q_0001ENSDARG00000057477ENSDART00000080160ENSDARG00000057527ENSDART00000080190CIL_00079Q_0002ENSG00000068305ENST00000338042ENST00000354410ENST00000449277ENST00000557785ENST00000557942ENSG00000168904ENST00000301981ENST00000447360ENST00000558172ENST00000558471ENST00000558500ENST00000558861ENST00000558879ENST00000558890ENST00000559433ENST00000559819ENST00000560213ENST00000561276ENSG00000201724ENST00000364854ENSG00000241562ENST00000471472ENSG00000259228ENST00000559372ENSG00000259257ENST00000558361ENSG00000259341ENST00000560103ENSG00000259590ENST00000561362ENSG00000259706ENST00000559111ENSG00000259760ENST00000559569ENSG00000264771ENST00000581052ENSG00000274294ENST00000621331ENSG00000279846ENST00000623238
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000057477 ENSDART00000080160 N/A N/A N/A 2.045±1.35 N/A N/A 1.175±0.60 0.531±0.07 0.092±0.00 N/A 0.778±0.00 N/A N/A N/A
ENSDARG00000057527 ENSDART00000080190 N/A N/A N/A 0.975±0.00 N/A N/A 0.481±0.42 0.771±0.00 N/A N/A 0.069±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000068305 ENST00000338042 5.489±0.00 N/A N/A 3.024±0.00 3.032±0.93 3.751±1.31 N/A 2.827±0.00 3.121±1.95 5.490±0.00 N/A 3.362±1.20 5.055±0.67 6.132±0.00
ENST00000354410 2.278±0.00 N/A N/A 2.939±0.00 2.401±0.00 2.385±0.78 N/A 1.595±0.00 2.146±1.38 4.725±0.00 1.479±0.00 1.723±0.00 N/A N/A
ENST00000449277 N/A N/A N/A N/A 2.027±0.00 N/A N/A N/A 1.625±0.00 N/A N/A 2.777±0.00 N/A N/A
ENST00000557785 3.503±0.00 N/A 2.924±0.00 5.559±0.00 5.217±0.00 3.616±0.00 7.303±0.00 3.764±0.00 8.416±0.00 N/A 2.214±0.00 4.955±0.00 N/A N/A
ENST00000557942 N/A N/A 1.997±0.00 8.227±0.00 1.611±0.00 N/A 5.974±0.00 N/A N/A N/A 1.527±0.00 N/A N/A N/A
ENST00000558049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168904 ENST00000301981 N/A 0.441±0.00 N/A 0.764±0.47 0.916±0.00 1.050±0.07 0.508±0.11 1.340±0.47 1.093±0.00 N/A 0.731±0.00 0.987±0.36 0.595±0.00 0.763±0.19
ENST00000331450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447360 2.458±0.00 N/A N/A 1.521±0.00 2.212±0.24 1.913±0.00 1.766±0.00 4.017±0.00 5.230±0.00 2.337±0.44 4.418±0.00 2.134±0.10 4.795±1.08 5.976±0.34
ENST00000558172 N/A N/A 5.294±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.088±0.00 2.587±0.00 7.158±0.00
ENST00000558248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.206±1.41 N/A N/A N/A
ENST00000558500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.177±0.00 N/A N/A
ENST00000558771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558861 N/A N/A 4.886±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.036±0.00 N/A 3.061±0.00 10.269±0.00
ENST00000558890 N/A N/A N/A N/A N/A N/A 2.367±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000558911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559433 N/A N/A N/A N/A N/A N/A N/A 3.348±0.00 N/A 2.092±0.00 N/A N/A N/A N/A
ENST00000559774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.392±0.00 N/A N/A N/A
ENST00000560213 N/A N/A N/A N/A N/A N/A N/A 6.344±0.00 3.066±0.00 N/A N/A N/A N/A N/A
ENST00000560236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561276 4.332±0.00 1.891±0.00 N/A 3.866±0.00 N/A 5.237±2.38 3.722±0.00 3.071±0.00 5.121±1.94 1.334±0.00 5.380±0.00 2.862±0.00 2.524±0.63 10.209±1.98
ENST00000561431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201724 ENST00000364854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.369±0.00 N/A
ENSG00000241562 ENST00000471472 N/A 0.016±0.00 N/A 0.065±0.00 0.016±0.00 0.015±0.00 N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A
ENSG00000259228 ENST00000559372 0.026±0.00 0.041±0.00 N/A 0.068±0.00 0.064±0.00 N/A 0.048±0.00 0.361±0.33 N/A 0.244±0.00 N/A 0.063±0.07 N/A N/A
ENSG00000259257 ENST00000558361 N/A N/A 0.892±0.00 0.787±0.00 1.885±0.00 0.961±0.00 0.081±0.00 0.460±0.44 0.242±0.00 0.051±0.00 N/A 0.512±0.48 N/A 0.069±0.04
ENSG00000259341 ENST00000560103 N/A 0.178±0.00 N/A N/A N/A N/A 0.217±0.00 0.062±0.00 N/A N/A N/A N/A 0.186±0.02 N/A
ENSG00000259590 ENST00000561362 N/A 0.059±0.00 N/A 0.208±0.12 0.486±0.00 N/A 0.054±0.00 0.028±0.00 N/A 0.200±0.00 N/A N/A 0.166±0.02 0.110±0.00
ENSG00000259706 ENST00000559111 0.052±0.00 0.135±0.00 0.688±0.00 0.172±0.02 0.181±0.14 0.419±0.32 0.095±0.01 0.995±0.69 0.163±0.10 0.432±0.36 0.086±0.03 0.101±0.06 0.093±0.06 0.217±0.13
ENSG00000259760 ENST00000559569 N/A N/A N/A 0.268±0.00 0.676±0.00 N/A 1.687±1.53 0.595±0.00 N/A 3.491±3.09 N/A 0.372±0.00 0.259±0.00 N/A
ENSG00000264771 ENST00000581052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.612±0.00
ENSG00000274294 ENST00000621331 N/A 0.063±0.00 0.682±0.00 N/A 0.098±0.00 0.030±0.00 N/A 0.095±0.00 0.028±0.00 N/A N/A 0.151±0.03 N/A 0.156±0.02
ENSG00000279846 ENST00000623238 N/A 0.193±0.00 N/A 0.109±0.00 0.356±0.31 N/A N/A N/A N/A 0.118±0.00 N/A 0.128±0.00 0.090±0.00 N/A

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