C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 16 open reading frame 52
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185716 C16orf52 9606 + 16:22007638-22087534 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331057 C16orf52-001 22008209-22087534 nonsense_mediated_decay
  ENST00000542527 C16orf52-006 22008209-22084643 protein_coding
  ENST00000562186 C16orf52-004 22008311-22080797 nonsense_mediated_decay
  ENST00000562695 C16orf52-005 22008283-22076056 protein_coding
  ENST00000567004 C16orf52-002 22007638-22076378 protein_coding
  ENST00000568049 C16orf52-003 22085131-22087534 retained_intron
  ENST00000569656 C16orf52-201 22008209-22087533 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000542527ENST00000562695ENST00000567004ENST00000569656
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000542527 3.053±0.00 1.664±0.00 0.805±0.00 4.895±1.16 1.625±0.72 1.453±0.41 2.413±0.00 1.506±1.14 1.392±0.79 1.172±0.26 0.662±0.00 1.903±0.89 1.359±0.33 2.144±0.36
ENST00000562695 N/A N/A N/A N/A N/A N/A N/A N/A 3.139±0.00 N/A N/A N/A N/A N/A
ENST00000567004 N/A N/A N/A N/A N/A 1.950±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.791±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000556 CIL_000556_0001 CGP 16:21983865-22087534
CIL_0003F2 CIL_0003F2_0001 CGP 16:22007638-22156966

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035837 C12H16orf52 chromosome 16 open reading frame 52 protein_coding Danio_rerio
ENSMUSG00000046096 BC030336 cDNA sequence BC030336 protein_coding Mus_musculus

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