C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) I polypeptide D, 16kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186184 POLR1D 9606 + 13:27620743-27667422 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302979 POLR1D-003 27620766-27623452 protein_coding
  ENST00000399696 POLR1D-201 27621779-27623451 protein_coding
  ENST00000399697 POLR1D-004 27621866-27667415 protein_coding
  ENST00000465887 POLR1D-005 27621875-27667410 processed_transcript
  ENST00000472179 POLR1D-002 27648010-27665753 processed_transcript
  ENST00000489647 POLR1D-001 27621886-27651549 protein_coding
  ENST00000621089 POLR1D-202 27620743-27667422 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302979ENST00000399696ENST00000399697ENST00000489647ENST00000621089
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302979 6.962±0.00 5.718±0.00 0.730±0.00 6.341±0.00 7.923±0.00 15.740±0.00 6.373±0.00 7.056±0.00 3.145±0.00 14.489±0.00 8.215±0.00 11.097±1.12 4.633±0.00 11.493±0.00
ENST00000399696 12.335±0.00 15.138±0.00 2.089±0.00 5.751±2.22 7.346±0.00 15.251±10.18 10.387±6.68 7.111±3.66 6.646±1.62 21.511±14.79 17.932±13.12 66.092±46.94 28.463±7.20 20.951±5.99
ENST00000399697 11.346±0.00 6.713±0.00 2.002±0.00 5.435±0.52 7.943±3.74 11.492±7.41 3.777±2.10 5.203±2.51 5.773±0.31 6.299±3.37 5.932±5.47 14.115±6.68 10.703±1.89 21.312±4.94
ENST00000489647 N/A 2.064±0.00 0.373±0.00 N/A 2.269±0.00 0.878±0.00 N/A 0.560±0.00 N/A 1.190±0.00 0.385±0.00 3.234±0.00 N/A N/A
ENST00000621089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.782±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0001 VISTA 13:27444442-28045997
CIL_0007MT CIL_0007MT_0001 UCNEbase 13:27505095-28294517
CIL_00082E CIL_00082E_0001 VISTA 13:27521824-28123399
CIL_0004M8 CIL_0004M8_0001 CGP 13:27545911-27667422
CIL_0004CM CIL_0004CM_0001 CGP 13:27620743-27794768

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0010467 TAS gene expression
GO:0032481 TAS positive regulation of type I interferon production
GO:0045087 TAS innate immune response
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037570 polr1d polymerase (RNA) I polypeptide D protein_coding Danio_rerio
ENSMUSG00000029642 Polr1d polymerase (RNA) I polypeptide D protein_coding Mus_musculus

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