C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004CM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000186184-ENSG00000169840 CGP 9606 13:27620743-27794768
GeneTranscriptPositionBiotype
ENSG00000169840 (GSX1)
GS homeobox 1 		ENST00000302945 (GSX1-001) 27792643-27794768 protein_coding
ENSG00000186184 (POLR1D)
polymerase (RNA) I polypeptide D, 16kDa 		ENST00000302979 (POLR1D-003) 27620766-27623452 protein_coding
ENST00000399696 (POLR1D-201) 27621779-27623451 protein_coding
ENST00000399697 (POLR1D-004) 27621866-27667415 protein_coding
ENST00000465887 (POLR1D-005) 27621875-27667410 processed_transcript
ENST00000472179 (POLR1D-002) 27648010-27665753 processed_transcript
ENST00000489647 (POLR1D-001) 27621886-27651549 protein_coding
ENST00000621089 (POLR1D-202) 27620743-27667422 protein_coding
ENSG00000226703 (NPM1P4)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 4 		ENST00000414095 (NPM1P4-001) 27696393-27697204 processed_pseudogene
ENSG00000273552 (RP11-87C7.3)
 ENST00000611364 (RP11-87C7.3-001) 27667540-27680566 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004CM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029642-ENSMUSG00000053129 CGP 10090 5:147077050-147190947
GeneTranscriptPositionBiotype
ENSMUSG00000029642 (Polr1d)
polymerase (RNA) I polypeptide D 		ENSMUST00000050970 (Polr1d-001) 147077050-147079086 protein_coding
ENSMUST00000110557 (Polr1d-002) 147077346-147111361 protein_coding
ENSMUSG00000053129 (Gsx1)
GS homeobox 1 		ENSMUST00000065382 (Gsx1-001) 147188696-147190947 protein_coding
ENSMUSG00000083988 (Rps10-ps4)
ribosomal protein S10, pseudogene 4 		ENSMUST00000120308 (Rps10-ps4-001) 147100562-147101053 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004CM_0001ENSG00000169840ENST00000302945ENSG00000186184ENST00000302979ENST00000399696ENST00000399697ENST00000465887ENST00000472179ENST00000489647ENST00000621089ENSG00000226703ENST00000414095ENSG00000273552ENST00000611364CIL_0004CM_0002ENSMUSG00000029642ENSMUST00000050970ENSMUST00000110557ENSMUSG00000053129ENSMUST00000065382ENSMUSG00000083988ENSMUST00000120308
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004CM_0001ENSG00000169840ENST00000302945ENSG00000186184ENST00000302979ENST00000399696ENST00000399697ENST00000489647ENST00000621089ENSG00000226703ENST00000414095ENSG00000273552ENST00000611364CIL_0004CM_0002ENSMUSG00000029642ENSMUST00000050970ENSMUST00000110557ENSMUSG00000053129ENSMUST00000065382ENSMUSG00000083988ENSMUST00000120308
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169840 ENST00000302945 N/A N/A N/A 0.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000186184 ENST00000302979 6.962±0.00 5.718±0.00 0.730±0.00 6.341±0.00 7.923±0.00 15.740±0.00 6.373±0.00 7.056±0.00 3.145±0.00 14.489±0.00 8.215±0.00 11.097±1.12 4.633±0.00 11.493±0.00
ENST00000399696 12.335±0.00 15.138±0.00 2.089±0.00 5.751±2.22 7.346±0.00 15.251±10.18 10.387±6.68 7.111±3.66 6.646±1.62 21.511±14.79 17.932±13.12 66.092±46.94 28.463±7.20 20.951±5.99
ENST00000399697 11.346±0.00 6.713±0.00 2.002±0.00 5.435±0.52 7.943±3.74 11.492±7.41 3.777±2.10 5.203±2.51 5.773±0.31 6.299±3.37 5.932±5.47 14.115±6.68 10.703±1.89 21.312±4.94
ENST00000465887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489647 N/A 2.064±0.00 0.373±0.00 N/A 2.269±0.00 0.878±0.00 N/A 0.560±0.00 N/A 1.190±0.00 0.385±0.00 3.234±0.00 N/A N/A
ENST00000621089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.782±0.00 N/A N/A N/A
ENSG00000226703 ENST00000414095 0.026±0.00 0.014±0.00 N/A N/A 0.013±0.00 N/A 0.019±0.01 N/A 0.012±0.00 N/A N/A N/A N/A 0.012±0.00
ENSG00000273552 ENST00000611364 0.019±0.00 0.206±0.00 N/A 0.111±0.00 0.043±0.00 0.039±0.00 N/A 0.083±0.00 N/A 0.039±0.00 N/A N/A N/A 2.042±1.38
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029642 ENSMUST00000050970 13.496±2.40 4.190±0.88 28.003±5.02 10.947±4.35 8.364±2.71 7.002±1.99 8.034±0.76 10.652±1.03 15.652±12.14 3.839±0.55 35.823±1.72 13.832±13.95 39.947±14.13 15.437±1.30
ENSMUST00000110557 15.050±0.95 20.495±3.69 27.263±1.81 15.246±5.44 10.324±3.49 16.127±7.16 2.970±1.07 10.332±3.40 15.106±12.02 12.961±3.96 13.112±0.80 21.717±8.54 30.237±4.62 54.487±4.25
ENSMUSG00000053129 ENSMUST00000065382 N/A N/A N/A 2.399±1.65 N/A N/A N/A N/A 0.012±0.01 N/A N/A 0.029±0.00 N/A 0.012±0.00
ENSMUSG00000083988 ENSMUST00000120308 0.414±0.09 0.214±0.00 0.483±0.10 0.288±0.12 0.460±0.30 0.390±0.00 0.089±0.00 0.521±0.25 0.181±0.10 0.503±0.29 N/A 0.628±0.39 0.119±0.02 0.203±0.08

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