C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ELKS/RAB6-interacting/CAST family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187672 ERC2 9606 - 3:55508308-56468363 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000288221 ERC2-001 55508308-56468363 protein_coding
  ENST00000460849 ERC2-005 55510776-56468337 nonsense_mediated_decay
  ENST00000466358 ERC2-011 55606596-55610893 processed_transcript
  ENST00000468118 ERC2-010 55510904-55699518 processed_transcript
  ENST00000469720 ERC2-002 55510563-55647226 processed_transcript
  ENST00000472917 ERC2-016 56434582-56467134 processed_transcript
  ENST00000473469 ERC2-008 55510563-55607910 processed_transcript
  ENST00000477381 ERC2-007 56433789-56434747 processed_transcript
  ENST00000484530 ERC2-004 55509234-55610910 processed_transcript
  ENST00000484857 ERC2-015 56148988-56173899 retained_intron
  ENST00000486496 ERC2-003 55508311-55610910 processed_transcript
  ENST00000487287 ERC2-014 55511140-55766799 processed_transcript
  ENST00000492584 ERC2-006 55734838-56173510 protein_coding
  ENST00000612797 ERC2-201 55510776-56468337 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000288221ENST00000460849ENST00000466358ENST00000468118ENST00000472917ENST00000477381ENST00000484530ENST00000486496ENST00000492584
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000288221 0.024±0.00 N/A 2.417±0.16 0.038±0.00 N/A 0.057±0.00 N/A N/A N/A N/A 0.003±0.00 0.046±0.03 0.094±0.00
ENST00000460849 N/A 0.069±0.00 11.309±0.00 0.016±0.00 0.012±0.00 0.018±0.00 N/A 0.125±0.00 N/A 0.009±0.00 0.133±0.13 N/A N/A
ENST00000466358 N/A N/A N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468118 N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A
ENST00000472917 N/A N/A N/A N/A N/A N/A 0.323±0.00 0.509±0.00 N/A N/A N/A N/A 1.069±0.00
ENST00000477381 N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A 0.025±0.00 N/A N/A
ENST00000484530 N/A N/A N/A 0.013±0.00 N/A N/A 0.189±0.00 N/A N/A 0.017±0.00 0.009±0.00 N/A N/A
ENST00000486496 N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A 0.154±0.14 N/A
ENST00000492584 N/A 0.309±0.00 7.130±0.00 0.052±0.00 0.028±0.00 N/A 0.137±0.00 N/A 0.067±0.00 0.011±0.00 0.150±0.00 0.042±0.00 0.248±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083K CIL_00083K_0001 VISTA 3:55190515-55792232
CIL_0007P0 CIL_0007P0_0001 UCNEbase 3:55244350-55755999

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0030054 IEA cell junction
GO:0030426 ISS growth cone
GO:0042734 ISS presynaptic membrane
GO:0045202 IEA synapse
GO:0048786 TAS presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090308 ERC2 (2 of 2) ELKS/RAB6-interacting/CAST family member 2 protein_coding Danio_rerio
ENSMUSG00000040640 Erc2 ELKS/RAB6-interacting/CAST family member 2 protein_coding Mus_musculus

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