C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 15 open reading frame 52
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188549 C15orf52 9606 - 15:40331452-40340967 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382688 C15orf52-003 40331452-40338976 retained_intron
  ENST00000397536 C15orf52-001 40331452-40338133 protein_coding
  ENST00000557973 C15orf52-005 40339588-40340920 processed_transcript
  ENST00000558858 C15orf52-006 40335633-40338040 protein_coding
  ENST00000558912 C15orf52-004 40336559-40340638 retained_intron
  ENST00000559313 C15orf52-002 40333757-40340967 protein_coding
  ENST00000560922 C15orf52-007 40337850-40340042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382688ENST00000397536ENST00000558912ENST00000559313ENST00000560922
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382688 N/A 1.240±0.00 N/A 0.461±0.00 1.276±0.46 N/A N/A N/A 0.419±0.07 1.389±0.00 N/A 2.451±0.00 1.017±0.00 1.482±0.00
ENST00000397536 0.412±0.00 1.905±0.00 N/A 0.668±0.00 2.323±0.00 8.047±0.00 13.759±0.00 2.186±0.00 N/A 0.589±0.00 3.046±0.00 1.166±0.64 0.633±0.00 1.034±0.26
ENST00000558912 N/A N/A 0.212±0.00 0.050±0.00 0.457±0.00 0.785±0.00 N/A N/A 0.510±0.00 0.689±0.00 1.562±0.00 N/A N/A N/A
ENST00000559313 N/A N/A N/A N/A 1.116±0.00 0.634±0.00 N/A 0.165±0.00 1.276±0.00 N/A 1.489±0.00 N/A N/A N/A
ENST00000560922 N/A N/A 1.097±0.00 N/A N/A N/A N/A 1.257±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W0 CIL_0008W0_0001 VISTA 15:39791359-40393937

Gene Ontology

GO IDEvidence TypeGO Description
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090013 C17H15orf52 chromosome 15 open reading frame 52 protein_coding Danio_rerio
ENSMUSG00000045838 A430105I19Rik RIKEN cDNA A430105I19 gene protein_coding Mus_musculus

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