C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 34
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188739 RBM34 9606 - 1:235131183-235161457 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000408888 RBM34-001 235131183-235161457 protein_coding
  ENST00000429912 RBM34-004 235154930-235161258 protein_coding
  ENST00000447801 RBM34-010 235131667-235161220 protein_coding
  ENST00000468751 RBM34-006 235154881-235161171 retained_intron
  ENST00000474086 RBM34-005 235135649-235161234 nonsense_mediated_decay
  ENST00000475960 RBM34-007 235155088-235160962 retained_intron
  ENST00000476261 RBM34-002 235152488-235161232 retained_intron
  ENST00000485019 RBM34-008 235160195-235161216 processed_transcript
  ENST00000486751 RBM34-003 235160150-235161283 retained_intron
  ENST00000495224 RBM34-009 235131649-235136114 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000408888ENST00000447801ENST00000474086ENST00000495224
Transcript ID Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000408888 4.625±0.00 N/A N/A N/A N/A N/A N/A 4.563±0.26 N/A
ENST00000447801 N/A 25.767±0.00 9.428±0.00 3.262±0.00 7.539±0.00 N/A N/A N/A 29.710±0.00
ENST00000474086 N/A N/A 2.974±0.00 N/A N/A N/A 47.928±0.00 N/A 66.332±0.00
ENST00000495224 N/A N/A N/A N/A N/A 4.946±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KF CIL_0006KF_0001 CGP 1:235109336-235161457

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022728 rbm34 RNA binding motif protein 34 protein_coding Danio_rerio
ENSMUSG00000033931 Rbm34 RNA binding motif protein 34 protein_coding Mus_musculus

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