C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sialophorin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197471 SPN 9606 + 16:29662979-29670876 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360121 SPN-201 29663219-29670490 protein_coding
  ENST00000395389 SPN-001 29662979-29665527 protein_coding
  ENST00000436527 SPN-002 29663219-29664793 protein_coding
  ENST00000561857 SPN-004 29668442-29670518 retained_intron
  ENST00000563039 SPN-003 29663255-29670876 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryTestisENST00000360121ENST00000395389ENST00000436527ENST00000563039
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000360121 0.640±0.00 4.001±0.00 0.343±0.25 0.519±0.09 0.416±0.00 0.307±0.20 0.088±0.00 1.900±0.67 N/A 5.242±0.00 0.094±0.00
ENST00000395389 N/A N/A N/A 0.904±0.00 N/A N/A N/A 5.749±0.00 0.705±0.00 2.596±0.00 N/A
ENST00000436527 N/A N/A N/A N/A N/A N/A N/A 2.528±0.00 N/A N/A N/A
ENST00000563039 N/A 4.443±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001562 IEA response to protozoan
GO:0001808 IEA negative regulation of type IV hypersensitivity
GO:0001931 IEA uropod
GO:0001934 IEA positive regulation of protein phosphorylation
GO:0004888 TAS transmembrane signaling receptor activity
GO:0005515 IPI protein binding
GO:0005604 IEA basement membrane
GO:0005615 IDA extracellular space
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006935 TAS chemotaxis
GO:0006955 TAS immune response
GO:0006968 TAS cellular defense response
GO:0007162 IEA negative regulation of cell adhesion
GO:0007163 TAS establishment or maintenance of cell polarity
GO:0007165 TAS signal transduction
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007596 TAS blood coagulation
GO:0009897 IEA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0016020 IDA membrane
GO:0031295 IEA T cell costimulation
GO:0042102 IEA positive regulation of T cell proliferation
GO:0042130 IEA negative regulation of T cell proliferation
GO:0042535 IDA positive regulation of tumor necrosis factor biosynthetic process
GO:0042742 IDA defense response to bacterium
GO:0045060 IEA negative thymic T cell selection
GO:0050688 IEA regulation of defense response to virus
GO:0050776 IEA regulation of immune response
GO:0050868 IEA negative regulation of T cell activation
GO:0050900 TAS leukocyte migration
GO:0070062 IDA extracellular vesicular exosome
GO:0097190 IEA apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000051457 Spn sialophorin protein_coding Mus_musculus

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