C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 13 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197969 VPS13A 9606 + 9:77177353-77421541 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355766 VPS13A-014 77350917-77353631 retained_intron
  ENST00000357409 VPS13A-006 77177534-77385191 protein_coding
  ENST00000360280 VPS13A-005 77177445-77421541 protein_coding
  ENST00000376634 VPS13A-001 77177353-77383006 protein_coding
  ENST00000376636 VPS13A-010 77177445-77417483 protein_coding
  ENST00000376646 VPS13A-009 77389995-77417625 protein_coding
  ENST00000419472 VPS13A-002 77318521-77339182 protein_coding
  ENST00000423463 VPS13A-011 77279846-77319670 processed_transcript
  ENST00000467124 VPS13A-003 77405968-77416132 protein_coding
  ENST00000471439 VPS13A-008 77209488-77211617 processed_transcript
  ENST00000484581 VPS13A-004 77389711-77416393 protein_coding
  ENST00000493341 VPS13A-007 77293494-77319670 nonsense_mediated_decay
  ENST00000539950 VPS13A-013 77340201-77340711 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357409ENST00000360280ENST00000376634ENST00000376636ENST00000376646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357409 0.317±0.00 0.810±0.00 2.820±0.00 2.028±0.87 N/A 2.154±0.00 0.910±0.00 1.461±0.01 1.378±0.93 3.419±0.00 N/A 4.365±0.00 0.102±0.04 4.410±0.43
ENST00000360280 N/A N/A 1.457±0.00 1.577±0.00 1.468±0.00 1.282±0.00 2.230±1.51 0.673±0.00 1.012±0.00 1.746±0.00 0.615±0.38 1.045±0.41 0.356±0.00 N/A
ENST00000376634 0.472±0.00 N/A N/A N/A 3.672±0.00 3.807±0.00 1.767±0.00 1.230±0.00 N/A N/A 0.415±0.06 6.201±0.00 0.087±0.00 N/A
ENST00000376636 0.448±0.00 0.387±0.00 N/A N/A 0.692±0.00 0.651±0.00 N/A N/A 1.920±0.00 0.427±0.00 0.671±0.00 N/A 0.046±0.00 5.402±0.00
ENST00000376646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.689±0.00 0.345±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 NAS intracellular
GO:0006895 NAS Golgi to endosome transport
GO:0007399 IEA nervous system development
GO:0007626 IEA locomotory behavior
GO:0008104 NAS protein localization
GO:0008219 IEA cell death
GO:0015031 IEA protein transport
GO:0031045 IEA dense core granule
GO:0035176 IEA social behavior

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039225 vps13a vacuolar protein sorting 13 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000046230 Vps13a vacuolar protein sorting 13A (yeast) protein_coding Mus_musculus

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