C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 9, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197992 CLEC9A 9606 + 12:10030677-10066027 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355819 CLEC9A-001 10030677-10066027 protein_coding
  ENST00000538482 CLEC9A-003 10060599-10063182 retained_intron
  ENST00000544751 CLEC9A-002 10030678-10052835 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000355819ENST00000538482ENST00000544751
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000355819 0.138±0.00 0.054±0.00 0.381±0.07 0.078±0.06 0.119±0.00 0.092±0.03 0.101±0.07 0.054±0.00 0.218±0.00 0.131±0.02 0.096±0.04 1.084±0.00
ENST00000538482 N/A N/A N/A N/A N/A 0.086±0.00 0.061±0.00 N/A 0.304±0.00 N/A N/A N/A
ENST00000544751 N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TD CIL_0000TD_0001 CGP 12:10030677-10111627

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006898 IDA receptor-mediated endocytosis
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0050715 IDA positive regulation of cytokine secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000046080 Clec9a C-type lectin domain family 9, member a protein_coding Mus_musculus

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