C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structural maintenance of chromosomes 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198887 SMC5 9606 + 9:70258962-70354888 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361138 SMC5-001 70258962-70354888 protein_coding
  ENST00000471372 SMC5-003 70346392-70352245 retained_intron
  ENST00000475540 SMC5-002 70323573-70344674 retained_intron
  ENST00000618375 SMC5-004 70282472-70286784 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361138ENST00000471372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361138 3.004±0.00 3.545±0.00 1.648±0.00 1.469±1.01 3.747±1.87 2.921±0.25 1.827±0.85 2.180±1.01 1.633±0.23 3.437±0.07 2.270±1.99 5.919±1.44 1.439±0.65 3.772±2.10
ENST00000471372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.014±0.00 N/A 4.084±0.00 10.634±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000722 IMP telomere maintenance via recombination
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0000781 IDA chromosome, telomeric region
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0007067 IEA mitotic nuclear division
GO:0016605 IDA PML body
GO:0030054 IDA cell junction
GO:0030915 IDA Smc5-Smc6 complex
GO:0034184 IMP positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0045842 IMP positive regulation of mitotic metaphase/anaphase transition
GO:0090398 IMP cellular senescence

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044282 smc5 structural maintenance of chromosomes 5 protein_coding Danio_rerio
ENSMUSG00000024943 Smc5 structural maintenance of chromosomes 5 protein_coding Mus_musculus

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