C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structural maintenance of chromosomes 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000044282 smc5 7955 - 10:15646672-15673514 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000101191 smc5-001 15646672-15673514 protein_coding
  ENSDART00000122170 smc5-201 15646793-15673429 protein_coding
  ENSDART00000138389 smc5-004 15665764-15673478 protein_coding
  ENSDART00000142673 smc5-003 15646790-15647589 processed_transcript
  ENSDART00000147693 smc5-002 15651472-15659932 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000101191ENSDART00000122170ENSDART00000138389
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000101191 0.317±0.07 3.493±1.80 10.376±2.49 0.185±0.00 0.691±0.00
ENSDART00000122170 1.829±1.41 5.491±0.11 10.686±0.00 0.318±0.00 0.804±0.00
ENSDART00000138389 0.679±0.06 N/A 5.735±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000F3 CIL_0000F3_0001 CGP 10:15646672-15701436

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000724 IEA double-strand break repair via homologous recombination
GO:0006281 IEA DNA repair
GO:0030915 IEA Smc5-Smc6 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000198887 SMC5 structural maintenance of chromosomes 5 protein_coding Homo_sapiens
ENSMUSG00000024943 Smc5 structural maintenance of chromosomes 5 protein_coding Mus_musculus

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