C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TatD DNase domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000203705 TATDN3 9606 + 1:212791828-212816626 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366973 TATDN3-002 212791884-212816617 protein_coding
  ENST00000366974 TATDN3-001 212791828-212816626 protein_coding
  ENST00000488246 TATDN3-004 212791924-212804498 protein_coding
  ENST00000497768 TATDN3-003 212792923-212802751 processed_transcript
  ENST00000525569 TATDN3-009 212794870-212815175 processed_transcript
  ENST00000525574 TATDN3-014 212791926-212816626 nonsense_mediated_decay
  ENST00000526641 TATDN3-008 212791870-212815415 protein_coding
  ENST00000526997 TATDN3-015 212791906-212815225 protein_coding
  ENST00000527693 TATDN3-016 212804619-212815844 protein_coding
  ENST00000530392 TATDN3-010 212794985-212804524 processed_transcript
  ENST00000530399 TATDN3-011 212794683-212804651 protein_coding
  ENST00000530441 TATDN3-005 212791851-212804504 protein_coding
  ENST00000531963 TATDN3-007 212791884-212815597 protein_coding
  ENST00000532324 TATDN3-006 212791828-212815597 protein_coding
  ENST00000532433 TATDN3-012 212791921-212796977 retained_intron
  ENST00000533650 TATDN3-013 212791911-212812282 nonsense_mediated_decay
  ENST00000606486 TATDN3-017 212797132-212797682 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366973ENST00000366974ENST00000488246ENST00000525569ENST00000525574ENST00000526641ENST00000526997ENST00000527693ENST00000531963ENST00000532324
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366973 2.833±0.00 1.529±0.00 N/A 2.331±0.34 1.780±0.00 N/A 1.929±0.38 3.245±0.00 0.782±0.00 1.383±0.00 N/A 0.993±0.29 0.799±0.28 N/A
ENST00000366974 N/A N/A 0.551±0.00 1.706±0.00 0.489±0.00 0.794±0.26 N/A 1.885±0.00 0.917±0.23 N/A 1.947±0.53 1.235±0.50 0.954±0.00 3.222±0.33
ENST00000488246 N/A N/A N/A N/A 4.679±0.00 2.250±0.00 N/A 5.311±0.00 2.514±0.00 N/A N/A N/A 2.630±0.00 8.642±0.00
ENST00000525569 N/A N/A 1.363±0.00 3.213±0.00 N/A 0.903±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525574 N/A N/A N/A N/A N/A N/A 1.011±0.00 N/A N/A N/A N/A N/A 1.521±0.00 N/A
ENST00000526641 3.697±0.00 1.854±0.00 N/A N/A 3.031±0.00 1.654±0.00 2.416±0.00 2.724±0.00 N/A 1.328±0.00 N/A N/A N/A N/A
ENST00000526997 N/A N/A N/A N/A N/A N/A N/A N/A 1.211±0.00 1.144±0.00 1.727±0.00 1.982±0.00 N/A N/A
ENST00000527693 N/A N/A N/A 3.243±0.00 N/A 1.578±0.00 N/A N/A N/A 3.054±0.00 N/A 1.401±0.14 N/A N/A
ENST00000531963 N/A N/A 2.044±0.00 2.652±0.00 N/A 0.724±0.00 N/A N/A 1.274±0.00 N/A 1.769±0.00 N/A N/A 2.243±0.00
ENST00000532324 N/A N/A N/A N/A N/A N/A 1.533±0.00 N/A N/A N/A N/A 1.169±0.49 0.674±0.00 2.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JQ CIL_0008JQ_0001 VISTA 1:212231404-212833951

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0004536 IBA deoxyribonuclease activity
GO:0005634 IEA nucleus
GO:0005739 IEA mitochondrion
GO:0006308 IBA DNA catabolic process
GO:0016888 IEA endodeoxyribonuclease activity, producing 5'-phosphomonoesters
GO:0043229 IBA intracellular organelle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044072 TATDN3 TatD DNase domain containing 3 protein_coding Danio_rerio
ENSMUSG00000026632 Tatdn3 TatD DNase domain containing 3 protein_coding Mus_musculus

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