C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nucleolar RNA host gene 5 (non-protein coding)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000203875 SNHG5 9606 - 6:85660950-85678736 processed_transcript
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369605 SNHG5-001 85676990-85678736 lincRNA
  ENST00000414002 SNHG5-002 85677084-85678733 lincRNA
  ENST00000420199 SNHG5-010 85677084-85678722 retained_intron
  ENST00000425170 SNHG5-008 85677469-85678259 retained_intron
  ENST00000427501 SNHG5-005 85677082-85677993 retained_intron
  ENST00000428833 SNHG5-004 85677084-85678520 lincRNA
  ENST00000431043 SNHG5-009 85677128-85678733 retained_intron
  ENST00000433843 SNHG5-007 85677329-85678199 lincRNA
  ENST00000435947 SNHG5-003 85677082-85678652 lincRNA
  ENST00000453754 SNHG5-006 85677084-85678573 lincRNA
  ENST00000587692 SNHG5-012 85665852-85678720 lincRNA
  ENST00000589187 SNHG5-011 85660992-85678733 lincRNA
  ENST00000622963 SNHG5-022 85665560-85678736 lincRNA
  ENST00000623001 SNHG5-014 85677105-85678413 lincRNA
  ENST00000623163 SNHG5-019 85660950-85678235 lincRNA
  ENST00000623267 SNHG5-016 85677096-85678413 lincRNA
  ENST00000623650 SNHG5-018 85665642-85678436 lincRNA
  ENST00000623901 SNHG5-020 85660950-85678235 lincRNA
  ENST00000623910 SNHG5-013 85677084-85678436 lincRNA
  ENST00000624128 SNHG5-021 85665772-85678431 lincRNA
  ENST00000624295 SNHG5-015 85677083-85678405 lincRNA
  ENST00000625175 SNHG5-017 85677084-85678205 lincRNA

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369605ENST00000414002ENST00000420199ENST00000428833ENST00000431043ENST00000435947ENST00000587692ENST00000622963ENST00000623001ENST00000623910
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369605 N/A N/A N/A N/A N/A 1.537±0.00 N/A 2.394±0.00 5.889±0.00 N/A N/A 40.872±18.31 6.467±0.00 N/A
ENST00000414002 80.733±0.00 180.557±0.00 7.246±0.00 50.667±0.00 41.513±27.66 117.207±108.52 25.871±17.45 53.163±34.51 36.244±12.76 94.813±82.31 82.695±20.79 200.085±164.32 59.696±14.31 122.578±81.30
ENST00000420199 N/A N/A N/A N/A 3.232±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428833 46.455±0.00 N/A N/A 19.993±0.00 30.249±0.00 61.617±0.00 N/A N/A N/A N/A 33.851±0.00 83.836±33.31 N/A 39.505±16.59
ENST00000431043 N/A N/A N/A N/A N/A N/A N/A 1.559±0.00 N/A N/A N/A N/A N/A N/A
ENST00000435947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.549±0.00 53.097±0.00 N/A N/A
ENST00000587692 N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.341±0.00 N/A N/A N/A N/A
ENST00000622963 N/A N/A 2.142±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.249±0.00 13.975±0.00 N/A
ENST00000623910 N/A N/A N/A 15.600±0.00 N/A N/A 8.992±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BO CIL_0006BO_0002 CGP 6:85607785-87016683

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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