C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006BO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000040184-ENSDARG00000011468 CGP 7955 20:2760603-2892049
GeneTranscriptPositionBiotype
ENSDARG00000011468 (HTR1E)
5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled 		ENSDART00000018348 (HTR1E-201) 2890898-2892049 protein_coding
ENSDARG00000040184 (syncrip)
synaptotagmin binding, cytoplasmic RNA interacting protein 		ENSDART00000058779 (syncrip-001) 2760603-2771764 protein_coding
ENSDART00000129870 (syncrip-201) 2760607-2771761 protein_coding
ENSDART00000132186 (syncrip-002) 2760657-2768361 protein_coding
ENSDART00000133881 (syncrip-003) 2767665-2768929 retained_intron
ENSDART00000152135 (syncrip-008) 2770969-2773840 protein_coding
ENSDART00000152269 (syncrip-006) 2768698-2774552 protein_coding
ENSDART00000152655 (syncrip-007) 2768971-2773246 protein_coding
ENSDART00000152697 (syncrip-005) 2762159-2762727 protein_coding
ENSDART00000152727 (syncrip-004) 2760690-2763301 protein_coding
CIL_0006BO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135316-ENSG00000168830 CGP 9606 6:85607785-87016683
GeneTranscriptPositionBiotype
ENSG00000135316 (SYNCRIP)
synaptotagmin binding, cytoplasmic RNA interacting protein 		ENST00000355238 (SYNCRIP-002) 85608329-85642991 protein_coding
ENST00000369622 (SYNCRIP-001) 85614106-85643285 protein_coding
ENST00000444272 (SYNCRIP-003) 85637078-85643792 protein_coding
ENST00000616122 (SYNCRIP-201) 85607785-85642922 protein_coding
ENSG00000168830 (HTR1E)
5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled 		ENST00000305344 (HTR1E-002) 86937306-87016683 protein_coding
ENSG00000203875 (SNHG5)
small nucleolar RNA host gene 5 (non-protein coding) 		ENST00000369605 (SNHG5-001) 85676990-85678736 lincRNA
ENST00000414002 (SNHG5-002) 85677084-85678733 lincRNA
ENST00000420199 (SNHG5-010) 85677084-85678722 retained_intron
ENST00000425170 (SNHG5-008) 85677469-85678259 retained_intron
ENST00000427501 (SNHG5-005) 85677082-85677993 retained_intron
ENST00000428833 (SNHG5-004) 85677084-85678520 lincRNA
ENST00000431043 (SNHG5-009) 85677128-85678733 retained_intron
ENST00000433843 (SNHG5-007) 85677329-85678199 lincRNA
ENST00000435947 (SNHG5-003) 85677082-85678652 lincRNA
ENST00000453754 (SNHG5-006) 85677084-85678573 lincRNA
ENST00000587692 (SNHG5-012) 85665852-85678720 lincRNA
ENST00000589187 (SNHG5-011) 85660992-85678733 lincRNA
ENST00000622963 (SNHG5-022) 85665560-85678736 lincRNA
ENST00000623001 (SNHG5-014) 85677105-85678413 lincRNA
ENST00000623163 (SNHG5-019) 85660950-85678235 lincRNA
ENST00000623267 (SNHG5-016) 85677096-85678413 lincRNA
ENST00000623650 (SNHG5-018) 85665642-85678436 lincRNA
ENST00000623901 (SNHG5-020) 85660950-85678235 lincRNA
ENST00000623910 (SNHG5-013) 85677084-85678436 lincRNA
ENST00000624128 (SNHG5-021) 85665772-85678431 lincRNA
ENST00000624295 (SNHG5-015) 85677083-85678405 lincRNA
ENST00000625175 (SNHG5-017) 85677084-85678205 lincRNA
ENSG00000214457 (RPL7P29)
ribosomal protein L7 pseudogene 29 		ENST00000437151 (RPL7P29-001) 86970466-86971193 processed_pseudogene
ENSG00000217169 (MTHFD2P2)
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 2 		ENST00000407725 (MTHFD2P2-001) 87000045-87000291 processed_pseudogene
ENSG00000217272 (RP1-263J7.2)
 ENST00000401856 (RP1-263J7.2-001) 86170447-86171018 processed_pseudogene
ENSG00000217334 (RP11-33E24.3)
 ENST00000406187 (RP11-33E24.3-001) 85731371-85732011 processed_pseudogene
ENSG00000217769 (RP11-76H14.2)
 ENST00000468100 (RP11-76H14.2-001) 86897118-86897421 processed_pseudogene
ENSG00000218561 (RP1-253B10.1)
 ENST00000407695 (RP1-253B10.1-001) 86729708-86730108 processed_pseudogene
ENSG00000218766 (RP11-207F8.1)
 ENST00000407987 (RP11-207F8.1-001) 85868953-85869464 processed_pseudogene
ENSG00000219190 (RP1-253B10.2)
 ENST00000402173 (RP1-253B10.2-001) 86768522-86768932 processed_pseudogene
ENSG00000219500 (RP11-15J23.1)
 ENST00000404100 (RP11-15J23.1-001) 86432244-86432669 processed_pseudogene
ENSG00000220069 (RPL7P27)
ribosomal protein L7 pseudogene 27 		ENST00000403775 (RPL7P27-001) 86086415-86087134 processed_pseudogene
ENSG00000220563 (PKMP3)
pyruvate kinase, muscle pseudogene 3 		ENST00000405497 (PKMP3-001) 85659892-85660606 processed_pseudogene
ENSG00000220831 (NDUFA5P9)
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 9 		ENST00000472609 (NDUFA5P9-001) 86214237-86214576 processed_pseudogene
ENSG00000222686 (RNU4-72P)
RNA, U4 small nuclear 72, pseudogene 		ENST00000410754 (RNU4-72P-201) 85751581-85751753 snRNA
ENSG00000243124 (RN7SL643P)
RNA, 7SL, cytoplasmic 643, pseudogene 		ENST00000471845 (RN7SL643P-201) 86435848-86436138 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006BO_0001ENSDARG00000011468ENSDART00000018348ENSDARG00000040184ENSDART00000058779ENSDART00000129870ENSDART00000132186ENSDART00000133881ENSDART00000152135ENSDART00000152269ENSDART00000152655ENSDART00000152697ENSDART00000152727CIL_0006BO_0002ENSG00000135316ENST00000355238ENST00000369622ENST00000444272ENST00000616122ENSG00000168830ENST00000305344ENSG00000203875ENST00000369605ENST00000414002ENST00000420199ENST00000425170ENST00000427501ENST00000428833ENST00000431043ENST00000433843ENST00000435947ENST00000453754ENST00000587692ENST00000589187ENST00000622963ENST00000623001ENST00000623163ENST00000623267ENST00000623650ENST00000623901ENST00000623910ENST00000624128ENST00000624295ENST00000625175ENSG00000214457ENST00000437151ENSG00000217169ENST00000407725ENSG00000217272ENST00000401856ENSG00000217334ENST00000406187ENSG00000217769ENST00000468100ENSG00000218561ENST00000407695ENSG00000218766ENST00000407987ENSG00000219190ENST00000402173ENSG00000219500ENST00000404100ENSG00000220069ENST00000403775ENSG00000220563ENST00000405497ENSG00000220831ENST00000472609ENSG00000222686ENST00000410754ENSG00000243124ENST00000471845
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006BO_0001ENSDARG00000011468ENSDART00000018348ENSDARG00000040184ENSDART00000058779ENSDART00000129870ENSDART00000152135ENSDART00000152269CIL_0006BO_0002ENSG00000135316ENST00000355238ENST00000369622ENST00000616122ENSG00000168830ENST00000305344ENSG00000203875ENST00000369605ENST00000414002ENST00000420199ENST00000428833ENST00000431043ENST00000435947ENST00000587692ENST00000622963ENST00000623001ENST00000623910ENSG00000214457ENST00000437151ENSG00000217169ENST00000407725ENSG00000217272ENST00000401856ENSG00000217334ENST00000406187ENSG00000217769ENST00000468100ENSG00000218561ENST00000407695ENSG00000218766ENST00000407987ENSG00000219190ENST00000402173ENSG00000219500ENST00000404100ENSG00000220069ENST00000403775ENSG00000220563ENST00000405497ENSG00000220831ENST00000472609ENSG00000222686ENST00000410754ENSG00000243124ENST00000471845
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000011468 ENSDART00000018348 N/A N/A N/A 3.492±0.00 N/A N/A 0.147±0.00 N/A N/A N/A 0.124±0.00 N/A N/A N/A
ENSDARG00000040184 ENSDART00000058779 N/A N/A N/A 19.923±7.59 N/A N/A 37.769±23.51 26.278±6.80 N/A N/A N/A N/A N/A N/A
ENSDART00000129870 N/A N/A N/A 15.110±5.22 N/A N/A 21.230±9.79 23.792±14.15 8.518±0.00 N/A 13.097±0.00 N/A N/A N/A
ENSDART00000132186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000133881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000152135 N/A N/A N/A 20.119±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000152269 N/A N/A N/A 19.683±2.35 N/A N/A 12.191±1.53 11.574±4.72 6.418±0.00 N/A 13.848±0.00 N/A N/A N/A
ENSDART00000152655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000152697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000152727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135316 ENST00000355238 11.629±0.00 10.549±0.00 3.416±0.00 4.976±3.09 7.291±2.40 7.961±2.96 4.475±2.81 8.613±4.64 7.808±2.67 6.955±0.11 5.246±4.57 9.499±1.44 10.564±1.20 10.976±0.64
ENST00000369622 12.370±0.00 16.509±0.00 N/A 11.467±0.00 12.997±0.00 7.195±0.00 7.112±0.00 17.508±0.00 12.047±0.00 6.857±0.00 8.545±0.00 14.350±0.00 18.427±8.26 17.895±3.86
ENST00000444272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616122 3.132±0.00 3.844±0.00 N/A 2.693±0.00 3.383±0.00 N/A 0.855±0.00 2.489±0.00 4.791±0.00 2.168±0.00 1.857±0.00 5.843±1.17 N/A N/A
ENSG00000168830 ENST00000305344 N/A 0.034±0.00 N/A 0.836±0.01 N/A 0.057±0.00 N/A 0.026±0.00 N/A N/A N/A 0.879±0.52 0.023±0.00 0.418±0.22
ENSG00000203875 ENST00000369605 N/A N/A N/A N/A N/A 1.537±0.00 N/A 2.394±0.00 5.889±0.00 N/A N/A 40.872±18.31 6.467±0.00 N/A
ENST00000414002 80.733±0.00 180.557±0.00 7.246±0.00 50.667±0.00 41.513±27.66 117.207±108.52 25.871±17.45 53.163±34.51 36.244±12.76 94.813±82.31 82.695±20.79 200.085±164.32 59.696±14.31 122.578±81.30
ENST00000420199 N/A N/A N/A N/A 3.232±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428833 46.455±0.00 N/A N/A 19.993±0.00 30.249±0.00 61.617±0.00 N/A N/A N/A N/A 33.851±0.00 83.836±33.31 N/A 39.505±16.59
ENST00000431043 N/A N/A N/A N/A N/A N/A N/A 1.559±0.00 N/A N/A N/A N/A N/A N/A
ENST00000433843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.549±0.00 53.097±0.00 N/A N/A
ENST00000453754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587692 N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.341±0.00 N/A N/A N/A N/A
ENST00000589187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622963 N/A N/A 2.142±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.249±0.00 13.975±0.00 N/A
ENST00000623163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623910 N/A N/A N/A 15.600±0.00 N/A N/A 8.992±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000624128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000625175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214457 ENST00000437151 N/A 0.017±0.00 N/A 0.205±0.17 0.050±0.00 N/A 0.185±0.00 N/A N/A 0.047±0.00 0.015±0.00 0.089±0.05 N/A N/A
ENSG00000217169 ENST00000407725 N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000217272 ENST00000401856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A
ENSG00000217334 ENST00000406187 N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A 0.515±0.00 0.025±0.00 0.054±0.00 1.080±0.00
ENSG00000217769 ENST00000468100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 0.744±0.69 N/A N/A
ENSG00000218561 ENST00000407695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.269±0.00 0.270±0.00
ENSG00000218766 ENST00000407987 N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A 0.246±0.00 N/A N/A 0.049±0.00
ENSG00000219190 ENST00000402173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00
ENSG00000219500 ENST00000404100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.084±0.00 N/A N/A
ENSG00000220069 ENST00000403775 N/A N/A N/A 0.016±0.00 0.077±0.00 0.072±0.00 N/A 0.047±0.00 0.014±0.00 N/A 0.168±0.00 N/A N/A 0.028±0.00
ENSG00000220563 ENST00000405497 0.302±0.00 0.167±0.00 N/A 2.012±0.00 0.359±0.00 1.568±0.63 0.387±0.22 0.583±0.50 0.604±0.47 1.358±0.46 0.568±0.00 2.058±1.29 0.320±0.29 1.161±0.53
ENSG00000220831 ENST00000472609 N/A N/A N/A N/A N/A N/A 0.206±0.00 N/A N/A N/A N/A 0.357±0.00 N/A N/A
ENSG00000222686 ENST00000410754 0.287±0.00 0.472±0.00 N/A 0.295±0.00 0.184±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.709±0.45
ENSG00000243124 ENST00000471845 0.058±0.00 0.181±0.00 N/A 0.067±0.00 N/A 0.614±0.00 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00

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