C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: POU class 5 homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204531 POU5F1 9606 - 6:31164337-31180731 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000259915 POU5F1-001 31164337-31170693 protein_coding
  ENST00000441888 POU5F1-004 31164337-31180731 protein_coding
  ENST00000461401 POU5F1-003 31165700-31170658 retained_intron
  ENST00000471529 POU5F1-002 31164347-31166838 protein_coding
  ENST00000512818 POU5F1-006 31164351-31166838 protein_coding
  ENST00000513407 POU5F1-005 31164351-31167170 protein_coding
  ENST00000606567 POU5F1-007 31164348-31166838 protein_coding
  ENST00000619340 POU5F1-201 31164599-31170621 protein_coding
  ENST00000620031 POU5F1-202 31164338-31167170 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartKidneyLiverLungTestisENST00000441888ENST00000471529ENST00000513407ENST00000619340
Transcript ID Bladder Colon Heart Kidney Liver Lung Testis
ENST00000441888 N/A N/A N/A 0.574±0.00 N/A N/A N/A
ENST00000471529 0.290±0.00 0.665±0.00 N/A N/A 0.118±0.00 0.494±0.00 0.409±0.00
ENST00000513407 N/A N/A 0.171±0.00 5.142±0.00 N/A N/A N/A
ENST00000619340 0.611±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 ISS sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001714 IDA endodermal cell fate specification
GO:0001824 ISS blastocyst development
GO:0003130 IMP BMP signaling pathway involved in heart induction
GO:0003677 IDA:IEA DNA binding
GO:0003700 IEA:IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IC nucleus
GO:0005654 IDA nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006355 IEA:IDA regulation of transcription, DNA-templated
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0008134 IPI transcription factor binding
GO:0009611 IEP response to wounding
GO:0009653 TAS anatomical structure morphogenesis
GO:0009786 ISS regulation of asymmetric cell division
GO:0010468 IMP regulation of gene expression
GO:0031625 IPI ubiquitin protein ligase binding
GO:0035019 IMP somatic stem cell maintenance
GO:0035198 IDA miRNA binding
GO:0035413 IDA positive regulation of catenin import into nucleus
GO:0042789 ISS mRNA transcription from RNA polymerase II promoter
GO:0043565 IEA:IDA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060391 IDA positive regulation of SMAD protein import into nucleus
GO:0060795 IMP cell fate commitment involved in formation of primary germ layer
GO:0060913 IDA cardiac cell fate determination
GO:0060965 IMP negative regulation of gene silencing by miRNA
GO:0090081 IMP regulation of heart induction by regulation of canonical Wnt signaling pathway
GO:0090308 IDA regulation of methylation-dependent chromatin silencing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044774 pou5f3 POU domain, class 5, transcription factor 3 protein_coding Danio_rerio
ENSMUSG00000024406 Pou5f1 POU domain, class 5, transcription factor 1 protein_coding Mus_musculus

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