C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tectonic family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204852 TCTN1 9606 + 12:110614027-110649430 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377654 TCTN1-201 110616313-110649128 protein_coding
  ENST00000397655 TCTN1-019 110614113-110649128 protein_coding
  ENST00000397656 TCTN1-012 110614106-110649125 nonsense_mediated_decay
  ENST00000397659 TCTN1-009 110614164-110649128 protein_coding
  ENST00000460357 TCTN1-020 110643356-110649125 retained_intron
  ENST00000463313 TCTN1-016 110636370-110647262 retained_intron
  ENST00000464809 TCTN1-003 110614165-110649126 nonsense_mediated_decay
  ENST00000471804 TCTN1-024 110614126-110628118 protein_coding
  ENST00000478122 TCTN1-005 110614126-110630095 nonsense_mediated_decay
  ENST00000480648 TCTN1-002 110614168-110649085 nonsense_mediated_decay
  ENST00000481093 TCTN1-017 110647293-110649126 retained_intron
  ENST00000481720 TCTN1-010 110614113-110626382 nonsense_mediated_decay
  ENST00000482281 TCTN1-013 110635667-110641586 retained_intron
  ENST00000485445 TCTN1-015 110644656-110647808 retained_intron
  ENST00000490514 TCTN1-006 110614102-110649126 nonsense_mediated_decay
  ENST00000491068 TCTN1-014 110644708-110649126 retained_intron
  ENST00000495659 TCTN1-004 110614107-110649128 nonsense_mediated_decay
  ENST00000498072 TCTN1-011 110614102-110619923 nonsense_mediated_decay
  ENST00000546643 TCTN1-026 110614124-110629282 nonsense_mediated_decay
  ENST00000547461 TCTN1-030 110640446-110647757 nonsense_mediated_decay
  ENST00000547868 TCTN1-025 110614139-110632587 retained_intron
  ENST00000549123 TCTN1-032 110641049-110649128 protein_coding
  ENST00000550703 TCTN1-021 110614027-110630287 protein_coding
  ENST00000551555 TCTN1-022 110619836-110640503 processed_transcript
  ENST00000551590 TCTN1-001 110614027-110649430 protein_coding
  ENST00000552038 TCTN1-033 110641952-110649130 retained_intron
  ENST00000552318 TCTN1-027 110614063-110628918 nonsense_mediated_decay
  ENST00000552762 TCTN1-028 110619836-110628826 processed_transcript
  ENST00000614115 TCTN1-202 110614027-110649128 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397655ENST00000397656ENST00000397659ENST00000460357ENST00000478122ENST00000482281ENST00000495659ENST00000549123ENST00000550703ENST00000551590ENST00000552038ENST00000552762
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397655 N/A N/A N/A N/A N/A N/A N/A N/A 2.286±0.00 N/A 1.570±0.00 N/A N/A
ENST00000397656 N/A 2.449±0.00 1.307±0.00 N/A N/A N/A N/A 1.659±0.00 N/A N/A N/A N/A N/A
ENST00000397659 1.380±0.00 N/A N/A 4.279±0.00 2.457±0.00 N/A 5.449±2.66 1.840±0.00 5.304±0.00 N/A 2.884±1.68 4.831±1.91 10.448±0.00
ENST00000460357 N/A 0.424±0.00 0.376±0.00 1.551±0.00 0.288±0.00 N/A 1.748±0.00 N/A 0.817±0.00 N/A 1.211±0.77 N/A N/A
ENST00000478122 N/A N/A 1.985±0.99 0.653±0.00 N/A N/A 0.826±0.00 N/A N/A 0.115±0.00 1.158±0.59 1.384±0.00 N/A
ENST00000482281 N/A N/A N/A N/A N/A 1.261±0.00 N/A 1.330±0.00 N/A N/A N/A N/A N/A
ENST00000495659 N/A N/A N/A N/A 1.671±0.00 N/A N/A N/A 4.746±0.00 1.297±0.00 4.631±0.00 4.367±1.78 N/A
ENST00000549123 N/A N/A N/A N/A N/A N/A N/A 3.504±0.00 N/A N/A N/A N/A N/A
ENST00000550703 N/A N/A N/A N/A N/A 1.567±1.27 N/A N/A 2.742±0.00 1.257±0.00 2.006±1.56 1.677±0.00 N/A
ENST00000551590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.509±0.00 1.809±0.00 N/A
ENST00000552038 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.070±0.00 N/A N/A N/A
ENST00000552762 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.139±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001841 IEA neural tube formation
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0016020 IEA membrane
GO:0021523 IEA somatic motor neuron differentiation
GO:0021537 IEA telencephalon development
GO:0021904 IEA dorsal/ventral neural tube patterning
GO:0021956 IEA central nervous system interneuron axonogenesis
GO:0035869 IEA ciliary transition zone
GO:0036038 ISS TCTN-B9D complex
GO:0060271 ISS cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078447 tctn1 tectonic family member 1 protein_coding Danio_rerio
ENSMUSG00000038593 Tctn1 tectonic family member 1 protein_coding Mus_musculus

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