C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tectonic family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038593 Tctn1 10090 - 5:122241287-122264460 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000111738 Tctn1-001 122241287-122264460 protein_coding
  ENSMUST00000137118 Tctn1-003 122248440-122254566 retained_intron
  ENSMUST00000141281 Tctn1-002 122241287-122264460 nonsense_mediated_decay
  ENSMUST00000176677 Tctn1-006 122245571-122251678 processed_transcript
  ENSMUST00000177148 Tctn1-005 122252324-122264415 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111738ENSMUST00000137118ENSMUST00000141281
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111738 9.073±1.86 13.672±1.77 5.364±0.53 5.001±1.15 8.296±2.45 5.319±1.45 1.455±0.26 4.605±0.95 1.293±0.50 8.247±1.80 0.601±0.18 9.172±2.37 3.756±1.55 9.204±3.04
ENSMUST00000137118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.815±0.00 13.893±2.13 N/A N/A
ENSMUST00000141281 6.301±0.00 N/A 1.963±0.00 3.841±0.08 7.399±2.85 3.405±0.46 0.694±0.00 3.071±0.75 0.769±0.18 4.651±0.50 0.266±0.00 7.561±2.82 2.390±0.45 15.859±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000903 CIL_000903_0002 VISTA 5:121732502-122333355
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768
CIL_0004PJ CIL_0004PJ_0002 CGP 5:122206804-122264460
CIL_0004PK CIL_0004PK_0002 CGP 5:122241287-122324281

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001841 IMP neural tube formation
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008589 IMP regulation of smoothened signaling pathway
GO:0016020 IDA membrane
GO:0021523 IMP somatic motor neuron differentiation
GO:0021537 IMP telencephalon development
GO:0021904 IMP dorsal/ventral neural tube patterning
GO:0021956 IMP central nervous system interneuron axonogenesis
GO:0035869 IMP ciliary transition zone
GO:0036038 IDA TCTN-B9D complex
GO:0060271 IMP cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078447 tctn1 tectonic family member 1 protein_coding Danio_rerio
ENSG00000204852 TCTN1 tectonic family member 1 protein_coding Homo_sapiens

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