C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier organic anion transporter family, member 6A1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205359 SLCO6A1 9606 - 5:102371782-102499016 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379807 SLCO6A1-002 102371945-102498979 protein_coding
  ENST00000389019 SLCO6A1-003 102371945-102499016 protein_coding
  ENST00000505407 SLCO6A1-008 102475722-102498810 processed_transcript
  ENST00000505739 SLCO6A1-009 102438541-102477697 retained_intron
  ENST00000506729 SLCO6A1-001 102371782-102499016 protein_coding
  ENST00000511588 SLCO6A1-005 102371788-102373429 protein_coding
  ENST00000513675 SLCO6A1-004 102371946-102498913 protein_coding
  ENST00000514551 SLCO6A1-007 102419923-102498650 processed_transcript
  ENST00000514765 SLCO6A1-006 102371945-102391229 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastPlacentaTestisENST00000379807ENST00000389019ENST00000511588ENST00000513675ENST00000514765
Transcript ID Adipose Brain Breast Placenta Testis
ENST00000379807 N/A N/A N/A N/A 7.697±1.12
ENST00000389019 N/A N/A N/A 0.018±0.01 5.790±2.90
ENST00000511588 0.060±0.00 N/A N/A N/A N/A
ENST00000513675 N/A N/A N/A 0.053±0.00 5.050±0.00
ENST00000514765 N/A 0.041±0.00 0.064±0.00 0.024±0.01 41.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WC CIL_0007WC_0001 VISTA 5:102363369-102968199

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000026331 Slco6c1 solute carrier organic anion transporter family, member 6c1 protein_coding Mus_musculus
ENSMUSG00000026336 Slco6d1 solute carrier organic anion transporter family, member 6d1 protein_coding Mus_musculus

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