C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DENN/MADD domain containing 1C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205744 DENND1C 9606 - 19:6467207-6482557 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000381480 DENND1C-001 6467207-6481808 protein_coding
  ENST00000543576 DENND1C-014 6467498-6481787 protein_coding
  ENST00000586046 DENND1C-015 6477093-6481798 nonsense_mediated_decay
  ENST00000588421 DENND1C-005 6477428-6481753 protein_coding
  ENST00000588988 DENND1C-008 6476028-6478800 retained_intron
  ENST00000589491 DENND1C-007 6476851-6477588 retained_intron
  ENST00000590173 DENND1C-003 6477086-6481787 protein_coding
  ENST00000590444 DENND1C-009 6467207-6476246 retained_intron
  ENST00000590473 DENND1C-012 6477218-6482557 protein_coding
  ENST00000590818 DENND1C-010 6467208-6476215 retained_intron
  ENST00000590867 DENND1C-002 6467210-6480289 nonsense_mediated_decay
  ENST00000591030 DENND1C-004 6477112-6481798 processed_transcript
  ENST00000591795 DENND1C-013 6467950-6469651 retained_intron
  ENST00000592543 DENND1C-011 6476494-6481774 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000381480ENST00000543576ENST00000590444ENST00000590473ENST00000590818ENST00000590867ENST00000591795
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000381480 N/A 4.669±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543576 0.282±0.00 7.727±0.00 N/A N/A N/A 0.145±0.13 0.118±0.00 N/A 0.097±0.08 N/A 2.478±0.10 N/A
ENST00000590444 0.306±0.00 N/A 0.372±0.00 N/A N/A N/A N/A N/A 0.017±0.00 N/A N/A N/A
ENST00000590473 N/A N/A N/A N/A N/A 0.365±0.00 2.197±0.00 N/A N/A N/A N/A N/A
ENST00000590818 N/A N/A N/A 0.209±0.11 0.701±0.00 N/A N/A 0.469±0.00 N/A N/A N/A N/A
ENST00000590867 N/A 4.593±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591795 N/A N/A N/A N/A 1.552±0.00 N/A 0.507±0.00 2.187±0.00 N/A 2.601±0.00 N/A 1.405±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004CR CIL_0004CR_0001 CGP 19:6436079-6467221
CIL_0002QU CIL_0002QU_0001 CGP 19:6463777-6482557
CIL_00061U CIL_00061U_0001 CGP 19:6467207-6502848

Gene Ontology
GO IDEvidence TypeGO Description
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0031410 IEA cytoplasmic vesicle
GO:0032851 IDA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078503 DENND1C DENN/MADD domain containing 1C protein_coding Danio_rerio
ENSMUSG00000002668 Dennd1c DENN/MADD domain containing 1C protein_coding Mus_musculus

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