C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T cell receptor alpha variable 12-1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000211785 TRAV12-1 9606 + 14:21841240-21841774 TR_V_gene
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000390433 TRAV12-1-001 21841240-21841774 TR_V_gene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryPlacentaTestisENST00000390433
Transcript ID Adrenal Breast Colon Liver Lung Ovary Placenta Testis
ENST00000390433 2.013±0.00 0.329±0.10 0.912±0.53 0.081±0.00 1.233±0.00 0.295±0.19 0.209±0.00 0.092±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CX CIL_0008CX_0001 VISTA 14:21403052-22005074

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000076776 Trav7d-5 T cell receptor alpha variable 7D-5 TR_V_gene Mus_musculus
ENSMUSG00000094023 Trav7d-4 T cell receptor alpha variable 7D-4 TR_V_gene Mus_musculus
ENSMUSG00000094766 Trav7-4 T cell receptor alpha variable 7-4 TR_V_gene Mus_musculus
ENSMUSG00000095415 Trav7n-6 T cell receptor alpha variable 7N-6 protein_coding Mus_musculus
ENSMUSG00000096138 Trav7-6 T cell receptor alpha variable 7-6 TR_V_gene Mus_musculus
ENSMUSG00000096417 Trav7-2 T cell receptor alpha variable 7-2 TR_V_gene Mus_musculus
ENSMUSG00000096746 Trav7d-3 T cell receptor alpha variable 7D-3 TR_V_gene Mus_musculus
ENSMUSG00000096908 Trav7-3 T cell receptor alpha variable 7-3 TR_V_gene Mus_musculus

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