C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin III
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213023 SYT3 9606 - 19:50621307-50668394 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338916 SYT3-003 50621977-50638045 protein_coding
  ENST00000544769 SYT3-201 50621979-50668394 protein_coding
  ENST00000593901 SYT3-001 50621977-50639827 protein_coding
  ENST00000595117 SYT3-006 50622420-50626134 retained_intron
  ENST00000595557 SYT3-004 50621307-50625290 nonsense_mediated_decay
  ENST00000598997 SYT3-005 50632671-50639306 protein_coding
  ENST00000600079 SYT3-002 50621977-50639818 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000338916ENST00000544769ENST00000593901ENST00000595117ENST00000598997ENST00000600079
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000338916 N/A 0.170±0.00 N/A N/A N/A 0.035±0.00 N/A N/A N/A 0.129±0.00 N/A
ENST00000544769 N/A N/A 1.753±0.00 N/A 0.071±0.00 N/A 0.131±0.00 0.134±0.00 N/A 0.145±0.00 N/A
ENST00000593901 N/A N/A N/A N/A 0.071±0.00 N/A 0.118±0.00 0.135±0.00 N/A 0.141±0.00 N/A
ENST00000595117 N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.00 0.543±0.00 N/A
ENST00000598997 N/A N/A N/A N/A 0.157±0.00 N/A N/A N/A 0.156±0.00 N/A N/A
ENST00000600079 0.066±0.00 0.199±0.00 N/A 0.029±0.00 0.168±0.00 N/A N/A N/A 0.116±0.00 0.801±0.01 0.908±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0001786 IEA phosphatidylserine binding
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005544 NAS calcium-dependent phospholipid binding
GO:0005768 IDA endosome
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0017156 IEA calcium ion-dependent exocytosis
GO:0019905 IEA syntaxin binding
GO:0030054 IEA cell junction
GO:0030276 IEA clathrin binding
GO:0031340 IEA positive regulation of vesicle fusion
GO:0046872 IEA metal ion binding
GO:0051592 IEA response to calcium ion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075830 syt3 synaptotagmin III protein_coding Danio_rerio
ENSMUSG00000030731 Syt3 synaptotagmin III protein_coding Mus_musculus

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