C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SR-related CTD-associated factor 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213079 SCAF8 9606 + 6:154733325-154834244 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367178 SCAF8-001 154733325-154834060 protein_coding
  ENST00000367186 SCAF8-201 154733378-154834244 protein_coding
  ENST00000417268 SCAF8-202 154733378-154834244 protein_coding
  ENST00000461219 SCAF8-002 154733378-154792946 processed_transcript
  ENST00000464628 SCAF8-003 154733853-154792858 processed_transcript
  ENST00000479234 SCAF8-004 154822162-154824942 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367178ENST00000417268
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367178 9.033±0.00 15.792±0.00 6.352±0.00 9.236±1.37 7.394±0.44 9.080±2.37 4.935±0.66 3.607±0.00 6.201±3.67 5.783±4.22 4.933±0.87 20.037±4.47 4.446±0.86 23.962±0.73
ENST00000417268 N/A N/A N/A N/A 1.879±0.00 N/A N/A N/A 0.824±0.00 N/A 1.790±0.00 N/A 2.234±0.40 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055J CIL_00055J_0001 CGP 6:154733325-155257723

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016363 ISS nuclear matrix
GO:0043175 IPI RNA polymerase core enzyme binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018854 scaf4b SR-related CTD-associated factor 4b protein_coding Danio_rerio
ENSMUSG00000046201 Scaf8 SR-related CTD-associated factor 8 protein_coding Mus_musculus

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