C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 254
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213096 ZNF254 9606 + 19:24033405-24129961 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339642 ZNF254-003 24087184-24107349 protein_coding
  ENST00000342944 ZNF254-201 24033405-24129961 protein_coding
  ENST00000357002 ZNF254-001 24087193-24129852 protein_coding
  ENST00000593783 ZNF254-002 24104186-24107352 retained_intron
  ENST00000594886 ZNF254-005 24087176-24126545 nonsense_mediated_decay
  ENST00000595187 ZNF254-004 24087253-24126320 nonsense_mediated_decay
  ENST00000611359 ZNF254-202 24087160-24129961 protein_coding
  ENST00000613065 ZNF254-203 24033405-24129961 protein_coding
  ENST00000616028 ZNF254-204 24087160-24129961 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342944ENST00000357002ENST00000593783ENST00000594886ENST00000595187ENST00000611359ENST00000613065ENST00000616028
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342944 0.324±0.00 N/A N/A 0.452±0.00 0.335±0.00 N/A N/A 0.554±0.00 0.209±0.00 1.538±0.00 N/A 1.073±0.00 N/A N/A
ENST00000357002 0.438±0.00 0.793±0.00 N/A 2.049±1.06 0.823±0.00 1.622±0.69 0.814±0.41 1.941±0.22 0.868±0.06 1.580±0.25 0.158±0.00 0.640±0.39 0.706±0.00 1.322±0.18
ENST00000593783 N/A N/A 1.020±0.00 N/A 1.758±0.00 N/A N/A N/A 0.856±0.00 2.207±0.00 N/A N/A N/A N/A
ENST00000594886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.734±0.00 1.953±0.00 6.109±0.00
ENST00000595187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.150±0.00 N/A 6.430±0.00
ENST00000611359 0.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A
ENST00000613065 N/A N/A 0.892±0.00 0.777±0.37 1.404±0.00 N/A 0.403±0.00 N/A 0.944±0.00 3.064±0.00 N/A 0.580±0.31 0.434±0.17 0.583±0.00
ENST00000616028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.554±0.00 0.100±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076108 zgc:194336 zgc:194336 protein_coding Danio_rerio
ENSDARG00000088352 si:ch211-271g18.3 si:ch211-271g18.3 protein_coding Danio_rerio
ENSDARG00000089537 CABZ01079304.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090942 CABZ01054394.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000093134 CR388165.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000096851 si:dkey-111k8.6 si:dkey-111k8.6 protein_coding Danio_rerio
ENSMUSG00000057842 Zfp595 zinc finger protein 595 protein_coding Mus_musculus

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