C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: queuine tRNA-ribosyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213339 QTRT1 9606 + 19:10701430-10713437 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000250237 QTRT1-001 10701451-10713365 protein_coding
  ENST00000421333 QTRT1-003 10701454-10713437 nonsense_mediated_decay
  ENST00000585885 QTRT1-010 10701454-10709138 processed_transcript
  ENST00000587500 QTRT1-012 10712663-10713364 retained_intron
  ENST00000587599 QTRT1-008 10701466-10712397 nonsense_mediated_decay
  ENST00000587861 QTRT1-005 10711040-10713364 retained_intron
  ENST00000589488 QTRT1-002 10701430-10713345 retained_intron
  ENST00000590705 QTRT1-006 10701454-10712256 retained_intron
  ENST00000591643 QTRT1-009 10707306-10712255 protein_coding
  ENST00000592254 QTRT1-007 10701471-10707563 protein_coding
  ENST00000592376 QTRT1-011 10712563-10713359 protein_coding
  ENST00000592531 QTRT1-013 10712918-10713364 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000250237ENST00000587861ENST00000589488ENST00000590705ENST00000592376
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000250237 14.136±0.00 13.110±0.00 N/A 3.034±2.26 11.037±0.00 8.314±7.34 4.105±0.00 7.810±0.00 3.363±0.00 9.709±0.00 14.382±0.00 16.694±12.62 9.450±3.90 6.201±3.87
ENST00000587861 N/A N/A N/A 0.418±0.00 N/A 0.464±0.00 N/A 1.293±0.07 N/A N/A N/A 3.303±0.00 N/A 1.556±0.00
ENST00000589488 N/A 6.954±0.00 1.711±0.00 N/A 2.634±1.92 1.273±0.00 N/A 7.283±0.00 N/A N/A 1.138±0.00 17.419±3.82 2.599±0.56 6.517±3.84
ENST00000590705 N/A N/A N/A N/A N/A N/A 0.648±0.00 N/A 1.080±0.00 N/A N/A N/A N/A N/A
ENST00000592376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.163±0.00 20.979±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S9 CIL_0002S9_0001 CGP 19:10654261-10713437
CIL_00076W CIL_00076W_0002 CGP 19:10701430-10833488

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006400 TAS:IEA tRNA modification
GO:0008033 IEA tRNA processing
GO:0008479 TAS:IEA queuine tRNA-ribosyltransferase activity
GO:0008616 ISS:IEA queuosine biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043105 qtrt1 queuine tRNA-ribosyltransferase 1 protein_coding Danio_rerio
ENSMUSG00000002825 Qtrt1 queuine tRNA-ribosyltransferase 1 protein_coding Mus_musculus

Loading