C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: long intergenic non-protein coding RNA 948
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000227877 LINC00948 9606 - 10:59736995-59753445 processed_transcript
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000414264 LINC00948-001 59736995-59753445 lincRNA
  ENST00000430431 LINC00948-002 59736995-59753396 lincRNA
  ENST00000594536 LINC00948-003 59736995-59753445 lincRNA
  ENST00000598384 LINC00948-006 59737198-59739291 retained_intron
  ENST00000599605 LINC00948-004 59737198-59744864 lincRNA
  ENST00000600486 LINC00948-007 59737198-59739305 retained_intron
  ENST00000602051 LINC00948-005 59737198-59744244 lincRNA
  ENST00000612853 LINC00948-008 59738038-59739370 retained_intron
  ENST00000621566 LINC00948-009 59738467-59739682 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000414264ENST00000430431ENST00000594536ENST00000598384ENST00000599605ENST00000600486ENST00000602051ENST00000612853ENST00000621566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000414264 N/A N/A N/A N/A 1.083±0.00 N/A 0.123±0.00 N/A N/A 11.340±0.82 0.529±0.45 0.651±0.00 N/A
ENST00000430431 N/A N/A 0.318±0.00 0.443±0.00 N/A N/A N/A N/A 0.618±0.00 11.294±5.40 0.097±0.00 N/A 0.291±0.20
ENST00000594536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.326±0.00
ENST00000598384 N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A 0.160±0.00
ENST00000599605 N/A N/A N/A N/A 1.123±0.00 N/A N/A 0.421±0.00 N/A N/A N/A N/A N/A
ENST00000600486 0.179±0.00 0.342±0.00 0.237±0.00 0.195±0.00 0.253±0.00 N/A 0.160±0.00 0.268±0.00 0.111±0.00 N/A N/A N/A N/A
ENST00000602051 N/A 0.459±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.00
ENST00000621566 N/A N/A N/A 0.066±0.00 0.208±0.00 N/A N/A N/A 0.144±0.00 N/A 0.073±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PD CIL_0006PD_0002 CGP 10:59650761-59906656

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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