C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006PD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000013926-ENSDARG00000043334 CGP 7955 17:20483926-20526151
GeneTranscriptPositionBiotype
ENSDARG00000013926 (slc16a9a)
solute carrier family 16 (monocarboxylic acid transporters), member 9a 		ENSDART00000020167 (slc16a9a-001) 20483926-20496769 protein_coding
ENSDART00000125462 (slc16a9a-201) 20484211-20496736 protein_coding
ENSDART00000140742 (slc16a9a-002) 20490024-20496079 processed_transcript
ENSDARG00000043334 (ccdc6a)
coiled-coil domain containing 6a 		ENSDART00000063613 (ccdc6a-001) 20504116-20526151 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006PD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165449-ENSG00000108091 CGP 9606 10:59650761-59906656
GeneTranscriptPositionBiotype
ENSG00000108091 (CCDC6)
coiled-coil domain containing 6 		ENST00000263102 (CCDC6-001) 59788763-59906656 protein_coding
ENST00000491922 (CCDC6-002) 59791752-59805576 retained_intron
ENST00000518638 (CCDC6-003) 59806444-59812728 retained_intron
ENSG00000165449 (SLC16A9)
solute carrier family 16, member 9 		ENST00000395347 (SLC16A9-003) 59650765-59736002 protein_coding
ENST00000395348 (SLC16A9-001) 59650761-59710079 protein_coding
ENST00000490066 (SLC16A9-002) 59684098-59709522 processed_transcript
ENSG00000227877 (LINC00948)
long intergenic non-protein coding RNA 948 		ENST00000414264 (LINC00948-001) 59736995-59753445 lincRNA
ENST00000430431 (LINC00948-002) 59736995-59753396 lincRNA
ENST00000594536 (LINC00948-003) 59736995-59753445 lincRNA
ENST00000598384 (LINC00948-006) 59737198-59739291 retained_intron
ENST00000599605 (LINC00948-004) 59737198-59744864 lincRNA
ENST00000600486 (LINC00948-007) 59737198-59739305 retained_intron
ENST00000602051 (LINC00948-005) 59737198-59744244 lincRNA
ENST00000612853 (LINC00948-008) 59738038-59739370 retained_intron
ENST00000621566 (LINC00948-009) 59738467-59739682 retained_intron

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006PD_0001ENSDARG00000013926ENSDART00000020167ENSDART00000125462ENSDART00000140742ENSDARG00000043334ENSDART00000063613CIL_0006PD_0002ENSG00000108091ENST00000263102ENST00000491922ENST00000518638ENSG00000165449ENST00000395347ENST00000395348ENST00000490066ENSG00000227877ENST00000414264ENST00000430431ENST00000594536ENST00000598384ENST00000599605ENST00000600486ENST00000602051ENST00000612853ENST00000621566
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006PD_0001ENSDARG00000013926ENSDART00000020167ENSDART00000125462ENSDARG00000043334ENSDART00000063613CIL_0006PD_0002ENSG00000108091ENST00000263102ENSG00000165449ENST00000395347ENST00000395348ENST00000490066ENSG00000227877ENST00000414264ENST00000430431ENST00000594536ENST00000598384ENST00000599605ENST00000600486ENST00000602051ENST00000612853ENST00000621566
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000013926 ENSDART00000020167 N/A N/A N/A 7.758±2.79 N/A N/A 3.007±1.73 38.841±10.95 9.170±0.00 N/A 16.540±0.00 N/A N/A N/A
ENSDART00000125462 N/A N/A N/A 6.766±5.97 N/A N/A 2.395±0.56 59.555±15.71 11.601±0.00 N/A 11.540±0.00 N/A N/A N/A
ENSDART00000140742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000043334 ENSDART00000063613 N/A N/A N/A 16.578±9.09 N/A N/A 11.683±8.13 7.314±8.85 4.637±0.00 N/A 14.449±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108091 ENST00000263102 8.033±0.00 10.673±0.00 2.068±0.00 7.818±4.51 7.305±3.64 8.670±3.09 3.389±2.55 6.182±4.08 4.362±1.40 5.789±0.98 3.308±2.35 9.054±2.03 6.419±2.63 8.970±4.50
ENST00000491922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165449 ENST00000395347 N/A N/A N/A 2.063±0.00 0.690±0.26 1.303±1.23 0.270±0.00 8.565±7.93 0.399±0.09 0.376±0.22 0.418±0.08 3.025±1.54 0.110±0.05 0.228±0.00
ENST00000395348 0.143±0.00 0.299±0.00 N/A 2.914±0.00 N/A 0.424±0.00 0.155±0.03 9.998±0.00 N/A 0.303±0.00 N/A 4.206±2.32 N/A 0.965±0.84
ENST00000490066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.600±0.00 N/A N/A N/A
ENSG00000227877 ENST00000414264 N/A N/A N/A N/A 1.083±0.00 N/A 0.123±0.00 N/A N/A N/A 11.340±0.82 0.529±0.45 0.651±0.00 N/A
ENST00000430431 N/A N/A 0.318±0.00 0.443±0.00 N/A N/A N/A N/A N/A 0.618±0.00 11.294±5.40 0.097±0.00 N/A 0.291±0.20
ENST00000594536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.326±0.00
ENST00000598384 N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A 0.160±0.00
ENST00000599605 N/A N/A N/A N/A 1.123±0.00 N/A N/A 0.421±0.00 N/A N/A N/A N/A N/A N/A
ENST00000600486 0.179±0.00 0.342±0.00 0.237±0.00 0.195±0.00 0.253±0.00 N/A 0.160±0.00 0.268±0.00 N/A 0.111±0.00 N/A N/A N/A N/A
ENST00000602051 N/A 0.459±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.00
ENST00000621566 N/A N/A N/A 0.066±0.00 0.208±0.00 N/A N/A N/A N/A 0.144±0.00 N/A 0.073±0.00 N/A N/A

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