C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Gene Info | |||||
|---|---|---|---|---|---|
| Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B | ||||
| Gene Accession | Gene Name | Tax ID | Strand | Position | Gene Biotype |
ENSG00000229496  |
DDX39B | 9606 | - |
CHR_HSCHR6_MHC_MCF_CTG1:31606569-31622924  |
protein_coding |
| Transcript Accession | Transcript Name | Position | Transcript Biotype | ||
| ENST00000413678 |
DDX39B-001 | 31606569-31618794 | protein_coding | ||
| ENST00000414088 |
DDX39B-017 | 31609129-31617877 | protein_coding | ||
| ENST00000414440 |
DDX39B-003 | 31606569-31622924 | protein_coding | ||
| ENST00000414881 |
DDX39B-012 | 31615168-31618332 | protein_coding | ||
| ENST00000416183 |
DDX39B-013 | 31612958-31618335 | protein_coding | ||
| ENST00000416863 |
DDX39B-002 | 31606569-31618794 | protein_coding | ||
| ENST00000418760 |
DDX39B-011 | 31615180-31618337 | protein_coding | ||
| ENST00000428107 |
DDX39B-020 | 31607128-31610860 | protein_coding | ||
| ENST00000430703 |
DDX39B-006 | 31606569-31616883 | protein_coding | ||
| ENST00000438433 |
DDX39B-009 | 31611737-31618364 | protein_coding | ||
| ENST00000441479 |
DDX39B-016 | 31612972-31618075 | protein_coding | ||
| ENST00000446909 |
DDX39B-018 | 31611744-31617830 | protein_coding | ||
| ENST00000452163 |
DDX39B-010 | 31615231-31618349 | protein_coding | ||
| ENST00000452792 |
DDX39B-019 | 31607651-31618327 | protein_coding | ||
| ENST00000452908 |
DDX39B-014 | 31611756-31618283 | protein_coding | ||
| ENST00000457900 |
DDX39B-015 | 31615548-31618219 | protein_coding | ||
| ENST00000460187 |
DDX39B-007 | 31606569-31608093 | retained_intron | ||
| ENST00000461080 |
DDX39B-021 | 31607465-31608020 | retained_intron | ||
| ENST00000468089 |
DDX39B-008 | 31607623-31618747 | processed_transcript | ||
| ENST00000479206 |
DDX39B-023 | 31606593-31607284 | processed_transcript | ||
| ENST00000482080 |
DDX39B-022 | 31606569-31611824 | nonsense_mediated_decay | ||
| ENST00000494457 |
DDX39B-004 | 31606569-31618363 | retained_intron | ||
| ENST00000494835 |
DDX39B-005 | 31608762-31618347 | retained_intron | ||
Expression PatternsNo expression data. |
Conserved Regions |
|---|
| Gene is not located within a conserved region. |
Gene Ontology |
||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000245 | IDA | spliceosomal complex assembly |
| GO:0000346 | IDA | transcription export complex |
| GO:0000398 | IGI | mRNA splicing, via spliceosome |
| GO:0003676 | IEA | nucleic acid binding |
| GO:0003677 | IEA | DNA binding |
| GO:0004004 | IDA | ATP-dependent RNA helicase activity |
| GO:0004386 | IEA | helicase activity |
| GO:0005515 | IPI | protein binding |
| GO:0005524 | IEA | ATP binding |
| GO:0005634 | IDA | nucleus |
| GO:0005681 | IDA | spliceosomal complex |
| GO:0005687 | IDA | U4 snRNP |
| GO:0005688 | IDA | U6 snRNP |
| GO:0005737 | IDA | cytoplasm |
| GO:0006200 | IDA | ATP catabolic process |
| GO:0006406 | IGI | mRNA export from nucleus |
| GO:0008152 | IEA | metabolic process |
| GO:0008186 | IDA | RNA-dependent ATPase activity |
| GO:0008380 | IDA | RNA splicing |
| GO:0010501 | IDA | RNA secondary structure unwinding |
| GO:0016787 | IEA | hydrolase activity |
| GO:0017070 | IDA | U6 snRNA binding |
| GO:0030621 | IDA | U4 snRNA binding |
| GO:0032786 | IMP | positive regulation of DNA-templated transcription, elongation |
| GO:0043008 | IDA | ATP-dependent protein binding |
| GO:0044822 | IDA | poly(A) RNA binding |
| GO:0046784 | IDA | viral mRNA export from host cell nucleus |
| GO:2000002 | IMP | negative regulation of DNA damage checkpoint |
Homologs | |||||
| No Homologs available. | |||||
|---|---|---|---|---|---|
