C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000414440 DDX39B-003 ENSG00000229496 9606 - CHR_HSCHR6_MHC_MCF_CTG1:31606569-31622924 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 IDA spliceosomal complex assembly
GO:0000346 IDA transcription export complex
GO:0000398 IGI mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004004 IDA ATP-dependent RNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005687 IDA U4 snRNP
GO:0005688 IDA U6 snRNP
GO:0005737 IDA cytoplasm
GO:0006200 IDA ATP catabolic process
GO:0006406 IGI mRNA export from nucleus
GO:0008186 IDA RNA-dependent ATPase activity
GO:0008380 IDA RNA splicing
GO:0010501 IDA RNA secondary structure unwinding
GO:0016787 IEA hydrolase activity
GO:0017070 IDA U6 snRNA binding
GO:0030621 IDA U4 snRNA binding
GO:0032786 IMP positive regulation of DNA-templated transcription, elongation
GO:0043008 IDA ATP-dependent protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0046784 IDA viral mRNA export from host cell nucleus
GO:2000002 IMP negative regulation of DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068056 Ddx39b-001 protein_coding Mus_musculus 0 1943
ENSMUST00000172549 Ddx39b-004 protein_coding Mus_musculus 0 1873
ENSMUST00000173731 Ddx39b-006 protein_coding Mus_musculus 0 1873
ENSMUST00000174164 Ddx39b-005 retained_intron Mus_musculus 0 1153
ENSMUST00000174757 Ddx39b-002 protein_coding Mus_musculus 0 996
ENSDART00000052355 ddx39b-001 protein_coding Danio_rerio 0 959
ENSMUST00000142415 Atp6v1g2-006 retained_intron Mus_musculus 0 248
ENSMUST00000068261 Atp6v1g2-001 protein_coding Mus_musculus 0 248

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