C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000230102 RP11-407B7.1 9606 - 3:194005259-194070970 processed_transcript
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000420947 RP11-407B7.1-005 194015443-194057679 lincRNA
  ENST00000432154 RP11-407B7.1-001 194048920-194069529 lincRNA
  ENST00000443776 RP11-407B7.1-004 194052381-194058477 lincRNA
  ENST00000449350 RP11-407B7.1-002 194009458-194070952 lincRNA
  ENST00000458224 RP11-407B7.1-003 194005456-194070970 lincRNA
  ENST00000593326 RP11-407B7.1-011 194043124-194049127 lincRNA
  ENST00000593559 RP11-407B7.1-008 194043165-194049342 lincRNA
  ENST00000597775 RP11-407B7.1-010 194043163-194049340 lincRNA
  ENST00000597974 RP11-407B7.1-015 194055479-194058449 lincRNA
  ENST00000598535 RP11-407B7.1-007 194042911-194049342 lincRNA
  ENST00000599153 RP11-407B7.1-012 194043697-194049333 lincRNA
  ENST00000599441 RP11-407B7.1-006 194005437-194049342 lincRNA
  ENST00000599735 RP11-407B7.1-013 194055479-194058518 retained_intron
  ENST00000601524 RP11-407B7.1-014 194055479-194058389 retained_intron
  ENST00000601913 RP11-407B7.1-009 194043190-194049342 lincRNA
  ENST00000609015 RP11-407B7.1-018 194048919-194058449 lincRNA
  ENST00000609304 RP11-407B7.1-017 194057637-194061736 lincRNA
  ENST00000609933 RP11-407B7.1-016 194057637-194065428 lincRNA
  ENST00000610423 RP11-407B7.1-019 194055479-194058493 lincRNA
  ENST00000620876 RP11-407B7.1-020 194055479-194058451 lincRNA
  ENST00000622169 RP11-407B7.1-021 194005259-194015635 lincRNA

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000420947ENST00000432154ENST00000449350ENST00000458224ENST00000599153ENST00000599441ENST00000601524ENST00000609015ENST00000609933ENST00000622169
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000420947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.336±0.01 N/A
ENST00000432154 N/A 0.031±0.00 N/A N/A N/A 0.014±0.00 0.010±0.00 0.078±0.05 N/A 0.013±0.00 N/A N/A N/A N/A
ENST00000449350 N/A N/A N/A 0.205±0.13 0.240±0.00 0.050±0.00 N/A 0.072±0.00 0.231±0.00 0.047±0.00 0.056±0.00 0.015±0.01 0.344±0.11 N/A
ENST00000458224 0.145±0.00 N/A N/A N/A 0.213±0.00 N/A 0.034±0.00 N/A N/A N/A 0.542±0.00 N/A N/A N/A
ENST00000599153 N/A N/A N/A N/A 0.719±0.00 N/A N/A 0.548±0.00 N/A N/A N/A 0.052±0.00 N/A N/A
ENST00000599441 N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A 0.050±0.02 N/A N/A
ENST00000601524 N/A N/A N/A N/A 0.325±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A 12.742±0.00
ENST00000609933 N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 N/A N/A
ENST00000622169 N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CV CIL_0008CV_0001 VISTA 3:193471570-194073544
CIL_0007UX CIL_0007UX_0001 VISTA 3:193643028-194244689
CIL_0009B1 CIL_0009B1_0001 VISTA 3:193659729-194262381
CIL_0009A1 CIL_0009A1_0001 VISTA 3:193911571-194513668

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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