C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin gamma subfamily C, 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000242419 PCDHGC4 9606 + 5:141484997-141512979 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306593 PCDHGC4-001 141485174-141512979 protein_coding
  ENST00000610539 PCDHGC4-005 141485063-141485767 protein_coding
  ENST00000617094 PCDHGC4-002 141484997-141487789 protein_coding
  ENST00000618371 PCDHGC4-004 141485072-141511496 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000630 CIL_000630_000Q CGP 5:141330571-141512981
CIL_000630 CIL_000630_000P CGP 5:141338760-141512979
CIL_000630 CIL_000630_0012 CGP 5:141343829-141512979
CIL_000630 CIL_000630_0011 CGP 5:141350102-141512979
CIL_000630 CIL_000630_0015 CGP 5:141355025-141512979
CIL_000630 CIL_000630_000Y CGP 5:141360042-141512979
CIL_000630 CIL_000630_000S CGP 5:141364232-141512979
CIL_000630 CIL_000630_0014 CGP 5:141370264-141512979
CIL_000630 CIL_000630_000U CGP 5:141373914-141512979
CIL_000630 CIL_000630_000T CGP 5:141382739-141512979
CIL_000630 CIL_000630_000Z CGP 5:141387698-141512979
CIL_000630 CIL_000630_000V CGP 5:141390157-141512979
CIL_000630 CIL_000630_0016 CGP 5:141397987-141512979
CIL_000630 CIL_000630_0013 CGP 5:141402932-141512979
CIL_000630 CIL_000630_000R CGP 5:141408021-141512979
CIL_000630 CIL_000630_000W CGP 5:141412987-141512979
CIL_000630 CIL_000630_0010 CGP 5:141417645-141512979
CIL_000630 CIL_000630_000X CGP 5:141421047-141512979

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069223 pcdh1g26 protocadherin 1 gamma 26 protein_coding Danio_rerio
ENSDARG00000073755 pcdh1g22 protocadherin 1 gamma 22 protein_coding Danio_rerio
ENSDARG00000074145 BX119910.4 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074348 BX119910.3 protocadherin gamma subfamily C, 4 protein_coding Danio_rerio
ENSDARG00000075115 BX119910.4 protocadherin gamma subfamily C, 4 protein_coding Danio_rerio
ENSDARG00000077389 BX119910.6 protocadherin gamma subfamily C, 4 protein_coding Danio_rerio
ENSDARG00000077755 zgc:162322 protocadherin gamma subfamily C, 4 protein_coding Danio_rerio
ENSDARG00000078262 BX119910.9 protocadherin gamma subfamily C, 4 protein_coding Danio_rerio
ENSDARG00000079285 pcdh1g32 protocadherin 1 gamma 32 protein_coding Danio_rerio
ENSMUSG00000023036 Pcdhga12 protocadherin gamma subfamily C, 4 protein_coding Mus_musculus

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