C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin gamma subfamily C, 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023036 Pcdhga12 10090 + 18:37674335-37841873 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003599 Pcdhga12-201 37742094-37841873 protein_coding
  ENSMUST00000044851 Pcdhga12-202 37765580-37841873 protein_coding
  ENSMUST00000055935 Pcdhga12-203 37819546-37841873 protein_coding
  ENSMUST00000061279 Pcdhga12-204 37755773-37841870 protein_coding
  ENSMUST00000066140 Pcdhga12-205 37815079-37841870 protein_coding
  ENSMUST00000066149 Pcdhga12-206 37725706-37841873 protein_coding
  ENSMUST00000073447 Pcdhga12-207 37674335-37841870 protein_coding
  ENSMUST00000076807 Pcdhga12-208 37806410-37841873 protein_coding
  ENSMUST00000091935 Pcdhga12-209 37736936-37841845 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003599ENSMUST00000044851ENSMUST00000055935ENSMUST00000066140ENSMUST00000076807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003599 N/A N/A 8.249±2.73 23.825±10.40 6.389±0.10 N/A N/A 3.734±0.52 0.730±0.10 13.998±0.44 N/A 9.696±0.80 1.823±0.00 N/A
ENSMUST00000044851 N/A N/A N/A N/A N/A N/A 4.073±0.00 N/A N/A N/A N/A N/A 2.394±0.46 4.787±1.71
ENSMUST00000055935 N/A N/A N/A 29.829±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.685±3.09
ENSMUST00000066140 N/A N/A N/A 24.910±10.44 N/A 5.805±0.57 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000076807 31.283±9.08 72.199±9.54 26.646±7.67 41.510±17.01 23.654±4.18 15.488±1.32 12.550±2.21 10.384±0.88 2.368±0.42 48.705±1.57 3.517±0.38 38.435±9.10 7.747±2.75 2.318±1.38

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007283 IEA spermatogenesis
GO:0016021 IEA integral component of membrane
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069223 pcdh1g26 protocadherin 1 gamma 26 protein_coding Danio_rerio
ENSDARG00000073755 pcdh1g22 protocadherin 1 gamma 22 protein_coding Danio_rerio
ENSDARG00000074145 BX119910.4 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074348 BX119910.3 protocadherin gamma subfamily C, 4 protein_coding Danio_rerio
ENSDARG00000075115 BX119910.4 protocadherin gamma subfamily C, 4 protein_coding Danio_rerio
ENSDARG00000077389 BX119910.6 protocadherin gamma subfamily C, 4 protein_coding Danio_rerio
ENSDARG00000077755 zgc:162322 protocadherin gamma subfamily C, 4 protein_coding Danio_rerio
ENSDARG00000078262 BX119910.9 protocadherin gamma subfamily C, 4 protein_coding Danio_rerio
ENSDARG00000079285 pcdh1g32 protocadherin 1 gamma 32 protein_coding Danio_rerio
ENSG00000242419 PCDHGC4 protocadherin gamma subfamily C, 4 protein_coding Homo_sapiens

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