C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000243811 APOBEC3D 9606 + 22:39014363-39033276 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216099 APOBEC3D-001 39021113-39033276 protein_coding
  ENST00000381568 APOBEC3D-201 39014363-39032316 protein_coding
  ENST00000427494 APOBEC3D-202 39021113-39033261 protein_coding
  ENST00000622217 APOBEC3D-203 39021502-39032316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENST00000216099ENST00000427494
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000216099 4.045±0.00 N/A N/A N/A 0.152±0.00 N/A 1.819±0.00 N/A 0.461±0.00 N/A
ENST00000427494 N/A 0.214±0.00 1.184±0.00 0.972±0.00 N/A 0.833±0.00 0.724±0.00 0.218±0.00 2.109±0.00 2.081±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003824 IEA catalytic activity
GO:0005737 IDA cytoplasm
GO:0008152 IEA metabolic process
GO:0008270 IEA zinc ion binding
GO:0010529 IDA negative regulation of transposition
GO:0016814 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0045087 IEA innate immune response
GO:0045869 IDA negative regulation of single stranded viral RNA replication via double stranded DNA intermediate
GO:0051607 IDA defense response to virus
GO:0070383 IDA DNA cytosine deamination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000009585 Apobec3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 protein_coding Mus_musculus

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