C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: endogenous retrovirus group FRD, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000244476 ERVFRD-1 9606 - 6:11102489-11111732 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000472091 ERVFRD-1-001 11102489-11111732 protein_coding
  ENST00000542862 ERVFRD-1-201 11102491-11105674 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000472091ENST00000542862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000472091 N/A N/A N/A 0.010±0.00 N/A 0.373±0.26 N/A N/A 0.110±0.00 0.304±0.21 0.010±0.00 0.005±0.00 5.815±1.58 0.013±0.00
ENST00000542862 0.072±0.00 0.187±0.00 0.235±0.00 0.068±0.06 0.276±0.10 N/A 0.051±0.01 0.284±0.03 0.286±0.18 0.093±0.00 0.010±0.00 0.111±0.11 2.980±0.61 0.105±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000384 CIL_000384_0001 CGP 6:10980759-11138733

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0006949 IDA syncytium formation
GO:0016021 IEA integral component of membrane
GO:0019031 IEA viral envelope

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000047977 Synb syncytin b protein_coding Mus_musculus
ENSMUSG00000085957 Syna syncytin a protein_coding Mus_musculus
ENSMUSG00000098773 Gm27179 predicted gene 27179 protein_coding Mus_musculus

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