C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: patched domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000244694 PTCHD4 9606 - 6:47878028-48068689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339488 PTCHD4-002 47878028-48068689 protein_coding
  ENST00000398738 PTCHD4-001 47899609-48068653 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339488ENST00000398738
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339488 0.122±0.00 0.126±0.00 0.476±0.00 0.421±0.29 0.199±0.03 0.191±0.14 0.294±0.24 0.066±0.01 0.150±0.14 0.314±0.29 0.061±0.03 0.142±0.15 0.199±0.18 0.061±0.01
ENST00000398738 0.010±0.00 0.073±0.00 N/A 0.209±0.00 0.133±0.08 0.069±0.04 0.090±0.08 0.110±0.04 N/A 0.082±0.00 N/A 0.042±0.03 0.093±0.01 0.071±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007R CIL_00007R_0002 CGP 6:47781982-48068689

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process
GO:0008158 IEA hedgehog receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008249 ptchd4 patched domain containing 4 protein_coding Danio_rerio
ENSMUSG00000042256 Ptchd4 patched domain containing 4 protein_coding Mus_musculus

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