C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycophorin B (MNS blood group)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000250361 GYPB 9606 - 4:143996104-144019345 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000429670 GYPB-008 143997545-144019337 protein_coding
  ENST00000502664 GYPB-001 143996106-144019339 protein_coding
  ENST00000503255 GYPB-015 143997339-144019302 retained_intron
  ENST00000504951 GYPB-010 143996197-144019324 nonsense_mediated_decay
  ENST00000505583 GYPB-009 143996153-144019324 nonsense_mediated_decay
  ENST00000506516 GYPB-003 143996197-144019324 nonsense_mediated_decay
  ENST00000506679 GYPB-002 143996104-144019339 nonsense_mediated_decay
  ENST00000507009 GYPB-012 143996142-144019337 processed_transcript
  ENST00000508618 GYPB-014 143999256-144019345 retained_intron
  ENST00000508841 GYPB-013 144000060-144019345 retained_intron
  ENST00000510196 GYPB-011 143996197-144019324 processed_transcript
  ENST00000511198 GYPB-007 143996197-144019324 nonsense_mediated_decay
  ENST00000513128 GYPB-006 143996153-144019324 protein_coding
  ENST00000513557 GYPB-004 143996197-144019324 processed_transcript
  ENST00000513677 GYPB-005 143996197-144019324 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLungOvaryPlacentaTestisENST00000429670ENST00000502664ENST00000505583ENST00000506516ENST00000507009ENST00000508618ENST00000511198ENST00000513128ENST00000513557ENST00000513677
Transcript ID Adipose Adrenal Breast Colon Heart Lung Ovary Placenta Testis
ENST00000429670 N/A N/A 3.729±0.00 N/A N/A N/A N/A N/A N/A
ENST00000502664 N/A N/A N/A N/A N/A 0.557±0.00 N/A 0.579±0.19 N/A
ENST00000505583 N/A N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A
ENST00000506516 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A 0.104±0.00
ENST00000507009 N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00
ENST00000508618 0.120±0.00 0.079±0.00 N/A N/A N/A N/A N/A N/A 0.141±0.05
ENST00000511198 N/A N/A N/A N/A N/A 0.394±0.00 0.086±0.00 N/A N/A
ENST00000513128 0.157±0.00 N/A N/A 0.975±0.00 N/A 0.303±0.00 N/A 0.923±0.32 N/A
ENST00000513557 N/A N/A N/A 0.372±0.00 1.149±0.00 N/A N/A N/A N/A
ENST00000513677 N/A N/A 0.371±0.00 N/A N/A 2.347±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KM CIL_0008KM_0001 VISTA 4:143819940-144420422

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0016021 IEA integral component of membrane

Homologs

No Homologs available.

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