C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008KM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm25 VISTA 9606 4:143819940-144420422
GeneTranscriptPositionBiotype
ENSG00000170180 (GYPA)
glycophorin A (MNS blood group) 		ENST00000324022 (GYPA-002) 144111055-144140693 protein_coding
ENST00000360771 (GYPA-001) 144109304-144140751 protein_coding
ENST00000503627 (GYPA-006) 144111394-144140635 protein_coding
ENST00000504786 (GYPA-005) 144111394-144140635 protein_coding
ENST00000508337 (GYPA-003) 144111345-144140672 nonsense_mediated_decay
ENST00000509346 (GYPA-010) 144118564-144140693 retained_intron
ENST00000510771 (GYPA-008) 144110919-144114905 retained_intron
ENST00000512064 (GYPA-007) 144111367-144140635 protein_coding
ENST00000512789 (GYPA-004) 144111394-144140635 protein_coding
ENST00000514603 (GYPA-009) 144119363-144140693 retained_intron
ENST00000535709 (GYPA-201) 144111344-144140669 protein_coding
ENST00000616983 (GYPA-202) 144109303-144127908 protein_coding
ENSG00000197465 (GYPE)
glycophorin E (MNS blood group) 		ENST00000358615 (GYPE-001) 143870867-143905559 protein_coding
ENST00000437468 (GYPE-003) 143875313-143905563 protein_coding
ENST00000506264 (GYPE-002) 143870896-143905519 nonsense_mediated_decay
ENSG00000246448 (RP13-578N3.3)
 ENST00000499587 (RP13-578N3.3-001) 143700257-143865072 antisense
ENSG00000248828 (RP11-673E1.4)
 ENST00000506982 (RP11-673E1.4-001) 143953635-144126359 antisense
ENSG00000249741 (RP11-673E1.3)
 ENST00000502554 (RP11-673E1.3-001) 143911514-143912053 processed_pseudogene
ENSG00000250361 (GYPB)
glycophorin B (MNS blood group) 		ENST00000429670 (GYPB-008) 143997545-144019337 protein_coding
ENST00000502664 (GYPB-001) 143996106-144019339 protein_coding
ENST00000503255 (GYPB-015) 143997339-144019302 retained_intron
ENST00000504951 (GYPB-010) 143996197-144019324 nonsense_mediated_decay
ENST00000505583 (GYPB-009) 143996153-144019324 nonsense_mediated_decay
ENST00000506516 (GYPB-003) 143996197-144019324 nonsense_mediated_decay
ENST00000506679 (GYPB-002) 143996104-144019339 nonsense_mediated_decay
ENST00000507009 (GYPB-012) 143996142-144019337 processed_transcript
ENST00000508618 (GYPB-014) 143999256-144019345 retained_intron
ENST00000508841 (GYPB-013) 144000060-144019345 retained_intron
ENST00000510196 (GYPB-011) 143996197-144019324 processed_transcript
ENST00000511198 (GYPB-007) 143996197-144019324 nonsense_mediated_decay
ENST00000513128 (GYPB-006) 143996153-144019324 protein_coding
ENST00000513557 (GYPB-004) 143996197-144019324 processed_transcript
ENST00000513677 (GYPB-005) 143996197-144019324 processed_transcript
ENSG00000251600 (RP11-673E1.1)
 ENST00000505000 (RP11-673E1.1-002) 143977232-143981916 lincRNA
ENST00000509873 (RP11-673E1.1-001) 143912331-143982454 lincRNA
ENST00000510536 (RP11-673E1.1-003) 143937867-143981916 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0008KM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm25 VISTA 10090 8:80201065-80801915
GeneTranscriptPositionBiotype
ENSMUSG00000031714 (Gab1)
growth factor receptor bound protein 2-associated protein 1 		ENSMUST00000034150 (Gab1-201) 80764434-80880479 protein_coding
ENSMUSG00000031715 (Smarca5)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 		ENSMUST00000043359 (Smarca5-001) 80698507-80739497 protein_coding
ENSMUST00000122807 (Smarca5-002) 80705485-80739425 processed_transcript
ENSMUST00000140110 (Smarca5-004) 80715959-80717579 retained_intron
ENSMUST00000142470 (Smarca5-005) 80709426-80711698 retained_intron
ENSMUST00000148455 (Smarca5-003) 80725582-80726392 retained_intron
ENSMUST00000150277 (Smarca5-006) 80709738-80710861 retained_intron
ENSMUSG00000042353 (Frem3)
Fras1 related extracellular matrix protein 3 		ENSMUST00000039695 (Frem3-001) 80611080-80695356 protein_coding
ENSMUSG00000051839 (Gypa)
glycophorin A 		ENSMUST00000063359 (Gypa-201) 80494045-80510785 protein_coding
ENSMUSG00000086912 (4930505O20Rik)
RIKEN cDNA 4930505O20 gene 		ENSMUST00000142188 (4930505O20Rik-001) 80511842-80514473 antisense
ENSMUSG00000092902 (Gm25733)
predicted gene, 25733 		ENSMUST00000175161 (Gm25733-201) 80721352-80721477 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008KM_0001ENSG00000170180ENST00000324022ENST00000360771ENST00000508337ENST00000510771ENST00000512789ENST00000514603ENST00000616983ENSG00000197465ENST00000358615ENST00000437468ENST00000506264ENSG00000246448ENST00000499587ENSG00000248828ENST00000506982ENSG00000249741ENST00000502554ENSG00000250361ENST00000429670ENST00000502664ENST00000505583ENST00000506516ENST00000507009ENST00000508618ENST00000511198ENST00000513128ENST00000513557ENST00000513677ENSG00000251600ENST00000505000ENST00000509873ENST00000510536CIL_0008KM_0002ENSMUSG00000031714ENSMUST00000034150ENSMUSG00000031715ENSMUST00000043359ENSMUST00000122807ENSMUSG00000042353ENSMUST00000039695ENSMUSG00000051839ENSMUST00000063359ENSMUSG00000086912ENSMUST00000142188ENSMUSG00000092902ENSMUST00000175161
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000170180 ENST00000324022 0.085±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.741±0.00 N/A N/A 0.312±0.00 0.037±0.00
ENST00000360771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.260±0.00 N/A
ENST00000503627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508337 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510771 0.130±0.00 N/A 0.654±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00
ENST00000512064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512789 0.266±0.00 N/A N/A N/A N/A 0.365±0.00 N/A 0.392±0.00 N/A N/A N/A N/A 1.865±0.00 N/A
ENST00000514603 N/A N/A N/A 0.357±0.00 N/A N/A N/A N/A 0.533±0.00 N/A N/A N/A N/A 0.054±0.00
ENST00000535709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616983 N/A N/A 0.046±0.00 0.037±0.00 0.015±0.00 N/A N/A 0.061±0.00 0.011±0.00 0.413±0.00 N/A N/A 0.256±0.00 N/A
ENSG00000197465 ENST00000358615 0.495±0.00 1.036±0.00 N/A 0.431±0.31 0.668±0.00 0.245±0.00 0.340±0.00 0.187±0.00 0.012±0.00 0.263±0.00 N/A 0.022±0.00 0.134±0.08 0.208±0.01
ENST00000437468 N/A N/A 1.286±0.00 0.107±0.00 N/A N/A N/A N/A N/A 0.374±0.00 N/A 0.075±0.00 N/A 0.402±0.00
ENST00000506264 N/A N/A 0.045±0.00 N/A 0.274±0.00 N/A 0.060±0.00 N/A N/A 0.430±0.00 N/A 0.023±0.00 0.061±0.00 0.184±0.06
ENSG00000246448 ENST00000499587 0.112±0.00 0.382±0.00 N/A 0.255±0.00 0.275±0.00 0.111±0.00 0.079±0.00 0.029±0.00 N/A 0.327±0.00 0.152±0.00 0.165±0.01 0.092±0.00 N/A
ENSG00000248828 ENST00000506982 0.014±0.00 0.041±0.00 N/A 0.260±0.20 0.062±0.00 0.207±0.00 0.114±0.08 0.080±0.00 N/A 0.118±0.00 N/A 0.114±0.00 0.045±0.00 0.037±0.00
ENSG00000249741 ENST00000502554 0.351±0.00 0.534±0.00 1.223±0.00 0.137±0.06 0.607±0.35 0.527±0.00 0.334±0.25 N/A 0.313±0.00 0.435±0.16 0.083±0.00 N/A 0.232±0.00 1.230±0.67
ENSG00000250361 ENST00000429670 N/A N/A N/A N/A 3.729±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502664 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.557±0.00 N/A N/A 0.579±0.19 N/A
ENST00000503255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A
ENST00000506516 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00
ENST00000506679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00
ENST00000508618 0.120±0.00 0.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.05
ENST00000508841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511198 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.394±0.00 N/A 0.086±0.00 N/A N/A
ENST00000513128 0.157±0.00 N/A N/A N/A N/A 0.975±0.00 N/A N/A N/A 0.303±0.00 N/A N/A 0.923±0.32 N/A
ENST00000513557 N/A N/A N/A N/A N/A 0.372±0.00 1.149±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000513677 N/A N/A N/A N/A 0.371±0.00 N/A N/A N/A N/A 2.347±0.00 N/A N/A N/A N/A
ENSG00000251600 ENST00000505000 N/A 0.149±0.00 N/A N/A N/A 0.118±0.00 0.034±0.00 0.048±0.00 N/A N/A N/A N/A N/A 0.141±0.01
ENST00000509873 N/A N/A N/A 0.143±0.07 0.033±0.00 0.031±0.00 0.018±0.00 0.014±0.00 0.496±0.00 N/A N/A 0.076±0.05 0.035±0.00 0.209±0.11
ENST00000510536 N/A N/A 0.799±0.00 N/A 0.048±0.00 0.283±0.00 0.079±0.00 N/A N/A N/A N/A 0.165±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031714 ENSMUST00000034150 11.409±1.39 6.917±0.38 11.506±0.62 7.632±3.24 12.236±2.40 9.322±0.52 8.933±2.48 12.348±1.78 3.065±1.48 22.262±2.48 3.461±0.63 15.604±3.12 5.425±2.44 3.034±1.87
ENSMUSG00000031715 ENSMUST00000043359 1.123±0.32 N/A 4.368±0.25 8.488±0.38 0.746±0.18 1.832±0.71 1.096±0.10 1.152±0.40 4.970±5.17 2.129±0.51 1.891±0.88 11.938±5.75 11.235±7.61 5.372±7.36
ENSMUST00000122807 0.996±0.37 13.101±2.76 N/A 3.660±0.13 3.851±3.86 7.115±2.69 1.089±0.44 1.288±0.75 2.427±1.74 3.549±0.83 N/A 9.823±7.51 5.509±2.20 4.905±4.41
ENSMUST00000140110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042353 ENSMUST00000039695 N/A N/A 0.009±0.00 0.245±0.22 N/A N/A 0.010±0.00 0.004±0.00 0.047±0.04 0.006±0.00 0.008±0.00 0.083±0.04 0.017±0.01 0.121±0.04
ENSMUSG00000051839 ENSMUST00000063359 0.100±0.04 N/A 0.066±0.01 0.432±0.08 0.063±0.00 0.132±0.05 0.961±0.83 0.047±0.02 365.102±150.90 0.433±0.27 N/A 0.034±0.02 8.227±7.06 0.062±0.05
ENSMUSG00000086912 ENSMUST00000142188 0.043±0.01 N/A N/A 0.022±0.00 N/A N/A N/A 0.018±0.00 0.022±0.01 0.024±0.00 N/A 0.165±0.07 0.059±0.00 1.677±0.78
ENSMUSG00000092902 ENSMUST00000175161 1284.370±0.00 N/A 352.656±50.66 121.549±68.34 1688.420±704.21 3047.750±735.45 1055.475±48.36 2021.020±0.00 100.399±19.58 548.146±0.00 9.431±1.03 1830.087±2148.47 37.679±30.00 586.553±406.82

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