C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small Cajal body-specific RNA 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000252010 SCARNA5 9606 + 2:233275727-233276002 snoRNA
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000516201 SCARNA5-201 233275727-233276002 snoRNA

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000516201
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000516201 0.177±0.00 1.527±0.00 20.657±0.00 85.797±80.37 91.788±90.73 82.349±79.71 82.358±0.00 86.487±85.88 222.470±0.00 152.273±152.11 57.256±0.00 26.643±41.45 1.179±0.00 1.363±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HZ CIL_0003HZ_0001 CGP 2:233059967-233295674
CIL_0004L2 CIL_0004L2_0002 CGP 2:233210051-233347055

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000083760 SCARNA6 Small Cajal body specific RNA 6 snoRNA Danio_rerio
ENSDARG00000084622 SCARNA6 Small Cajal body specific RNA 6 snoRNA Danio_rerio
ENSMUSG00000087968 Gm25395 predicted gene, 25395 snoRNA Mus_musculus

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