C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004L2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000057430-ENSDARG00000038378 CGP 7955 15:44800381-44870331
GeneTranscriptPositionBiotype
ENSDARG00000038378 (sagb)
S-antigen; retina and pineal gland (arrestin) b 		ENSDART00000055995 (sagb-201) 44848055-44870331 protein_coding
ENSDART00000149029 (sagb-003) 44850937-44856931 nonsense_mediated_decay
ENSDART00000149079 (sagb-001) 44848073-44864557 protein_coding
ENSDART00000149361 (sagb-002) 44848056-44857001 protein_coding
ENSDARG00000057430 (atg16l1)
ATG16 autophagy related 16-like 1 (S. cerevisiae) 		ENSDART00000057959 (atg16l1-201) 44826075-44844611 protein_coding
ENSDART00000121850 (atg16l1-202) 44800384-44824124 protein_coding
ENSDART00000122085 (atg16l1-203) 44800381-44841878 protein_coding
ENSDARG00000083760 (SCARNA6)
Small Cajal body specific RNA 6 		ENSDART00000119160 (SCARNA6.1-201) 44821387-44821666 snoRNA
ENSDARG00000084622 (SCARNA6)
Small Cajal body specific RNA 6 		ENSDART00000120022 (SCARNA6.2-201) 44832357-44832655 snoRNA

Danio rerio Ensembl (Zv9)

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CIL_0004L2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000085978-ENSG00000130561 CGP 9606 2:233210051-233347055
GeneTranscriptPositionBiotype
ENSG00000130561 (SAG)
S-antigen; retina and pineal gland (arrestin) 		ENST00000409110 (SAG-001) 233307821-233347055 protein_coding
ENST00000412969 (SAG-005) 233307932-233347055 retained_intron
ENST00000415974 (SAG-008) 233307885-233319004 protein_coding
ENST00000447536 (SAG-007) 233307816-233327192 protein_coding
ENST00000453143 (SAG-016) 233307974-233327176 nonsense_mediated_decay
ENST00000461532 (SAG-010) 233319548-233320724 processed_transcript
ENST00000462487 (SAG-002) 233307879-233322969 processed_transcript
ENST00000469222 (SAG-006) 233327949-233346191 retained_intron
ENST00000471884 (SAG-004) 233307880-233347054 retained_intron
ENST00000473771 (SAG-012) 233334716-233340474 retained_intron
ENST00000474206 (SAG-009) 233316090-233328613 processed_transcript
ENST00000474220 (SAG-013) 233338526-233347055 retained_intron
ENST00000476500 (SAG-003) 233307816-233347054 retained_intron
ENST00000479450 (SAG-014) 233307884-233323004 processed_transcript
ENST00000483231 (SAG-011) 233331523-233346412 retained_intron
ENST00000492629 (SAG-015) 233343688-233347055 processed_transcript
ENSG00000251791 (SCARNA6)
small Cajal body-specific RNA 6 		ENST00000515982 (SCARNA6-201) 233288676-233288940 snoRNA
ENSG00000252010 (SCARNA5)
small Cajal body-specific RNA 5 		ENST00000516201 (SCARNA5-201) 233275727-233276002 snoRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004L2_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026289-ENSMUSG00000056055 CGP 10090 1:87755870-87845158
GeneTranscriptPositionBiotype
ENSMUSG00000026289 (Atg16l1)
autophagy related 16-like 1 (S. cerevisiae) 		ENSMUST00000027512 (Atg16l1-001) 87756013-87792428 protein_coding
ENSMUST00000113186 (Atg16l1-011) 87756076-87792422 protein_coding
ENSMUST00000113190 (Atg16l1-002) 87756086-87792425 protein_coding
ENSMUST00000127884 (Atg16l1-006) 87778458-87788562 retained_intron
ENSMUST00000129431 (Atg16l1-009) 87766901-87775142 retained_intron
ENSMUST00000133072 (Atg16l1-004) 87756056-87769400 retained_intron
ENSMUST00000134603 (Atg16l1-005) 87756093-87767983 retained_intron
ENSMUST00000137638 (Atg16l1-007) 87756076-87786199 retained_intron
ENSMUST00000139628 (Atg16l1-010) 87775565-87778958 retained_intron
ENSMUST00000144047 (Atg16l1-008) 87755870-87771398 protein_coding
ENSMUST00000151037 (Atg16l1-003) 87756088-87792425 retained_intron
ENSMUSG00000056055 (Sag)
S-antigen, retina and pineal gland (arrestin) 		ENSMUST00000077772 (Sag-001) 87803680-87845158 protein_coding
ENSMUST00000128761 (Sag-003) 87803680-87835396 retained_intron
ENSMUST00000130886 (Sag-002) 87803680-87825300 retained_intron
ENSMUST00000136708 (Sag-007) 87820707-87824469 processed_transcript
ENSMUST00000144334 (Sag-008) 87812164-87824459 processed_transcript
ENSMUST00000145385 (Sag-005) 87826488-87835414 retained_intron
ENSMUST00000155393 (Sag-004) 87803680-87834910 retained_intron
ENSMUST00000156381 (Sag-006) 87803680-87817863 retained_intron
ENSMUST00000177757 (Sag-201) 87803680-87845023 protein_coding
ENSMUSG00000087968 (Gm25395)
predicted gene, 25395 		ENSMUST00000157343 (Gm25395-201) 87776938-87777209 snoRNA
ENSMUSG00000089281 (Scarna6)
small Cajal body-specific RNA 6 		ENSMUST00000158656 (Scarna6-201) 87784556-87784820 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004L2_0001ENSDARG00000038378ENSDART00000055995ENSDART00000149029ENSDART00000149079ENSDART00000149361ENSDARG00000057430ENSDART00000057959ENSDART00000121850ENSDART00000122085ENSDARG00000083760ENSDART00000119160ENSDARG00000084622ENSDART00000120022CIL_0004L2_0002ENSG00000130561ENST00000409110ENST00000412969ENST00000415974ENST00000447536ENST00000453143ENST00000461532ENST00000462487ENST00000469222ENST00000471884ENST00000473771ENST00000474206ENST00000474220ENST00000476500ENST00000479450ENST00000483231ENST00000492629ENSG00000251791ENST00000515982ENSG00000252010ENST00000516201CIL_0004L2_0003ENSMUSG00000026289ENSMUST00000027512ENSMUST00000113186ENSMUST00000113190ENSMUST00000127884ENSMUST00000129431ENSMUST00000133072ENSMUST00000134603ENSMUST00000137638ENSMUST00000139628ENSMUST00000144047ENSMUST00000151037ENSMUSG00000056055ENSMUST00000077772ENSMUST00000128761ENSMUST00000130886ENSMUST00000136708ENSMUST00000144334ENSMUST00000145385ENSMUST00000155393ENSMUST00000156381ENSMUST00000177757ENSMUSG00000087968ENSMUST00000157343ENSMUSG00000089281ENSMUST00000158656
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004L2_0001ENSDARG00000038378ENSDART00000055995ENSDART00000149029ENSDART00000149079ENSDARG00000057430ENSDART00000057959ENSDART00000122085ENSDARG00000083760ENSDART00000119160ENSDARG00000084622ENSDART00000120022CIL_0004L2_0002ENSG00000130561ENST00000409110ENST00000412969ENST00000469222ENST00000474206ENST00000474220ENST00000476500ENST00000492629ENSG00000251791ENST00000515982ENSG00000252010ENST00000516201CIL_0004L2_0003ENSMUSG00000026289ENSMUST00000027512ENSMUST00000113186ENSMUST00000113190ENSMUST00000127884ENSMUST00000137638ENSMUST00000144047ENSMUST00000151037ENSMUSG00000056055ENSMUST00000077772ENSMUST00000128761ENSMUST00000130886ENSMUST00000136708ENSMUST00000144334ENSMUST00000145385ENSMUST00000155393ENSMUST00000177757ENSMUSG00000087968ENSMUST00000157343ENSMUSG00000089281ENSMUST00000158656
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038378 ENSDART00000055995 N/A N/A N/A 0.175±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000149029 N/A N/A N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000149079 N/A N/A N/A 1.022±0.92 N/A N/A N/A 0.248±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000149361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000057430 ENSDART00000057959 N/A N/A N/A 15.435±0.86 N/A N/A 8.249±5.91 6.718±2.52 1.286±0.00 N/A 3.390±0.00 N/A N/A N/A
ENSDART00000121850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000122085 N/A N/A N/A 7.204±0.00 N/A N/A 2.934±0.00 3.934±0.00 1.487±0.00 N/A N/A N/A N/A N/A
ENSDARG00000083760 ENSDART00000119160 N/A N/A N/A 11.372±0.00 N/A N/A 0.374±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000084622 ENSDART00000120022 N/A N/A N/A 364.537±582.86 N/A N/A 888.309±785.80 443.103±0.00 7.092±0.00 N/A 8.323±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130561 ENST00000409110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.388±0.00
ENST00000412969 N/A N/A N/A 0.039±0.00 N/A 0.081±0.00 N/A 0.060±0.00 0.020±0.00 0.119±0.09 0.051±0.02 0.031±0.02 0.029±0.00 N/A
ENST00000415974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469222 0.102±0.00 0.216±0.00 N/A 0.242±0.00 0.132±0.00 0.067±0.00 0.042±0.00 0.190±0.00 0.029±0.00 0.062±0.00 0.044±0.00 0.018±0.01 N/A 0.379±0.18
ENST00000471884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A
ENST00000474220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.211±0.00 1.227±0.00
ENST00000476500 0.040±0.00 0.159±0.00 N/A 0.052±0.00 0.066±0.04 0.019±0.00 0.020±0.00 0.094±0.00 0.064±0.00 0.024±0.00 0.007±0.00 0.012±0.00 0.007±0.00 0.133±0.00
ENST00000479450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.294±0.24 N/A
ENSG00000251791 ENST00000515982 0.159±0.00 0.676±0.00 58.376±0.00 35.585±34.17 71.992±71.46 63.015±62.06 10.889±10.66 10.242±10.07 101.996±101.84 53.826±53.58 21.647±0.00 23.735±39.34 0.440±0.07 5.061±0.00
ENSG00000252010 ENST00000516201 0.177±0.00 1.527±0.00 20.657±0.00 85.797±80.37 91.788±90.73 82.349±79.71 82.358±0.00 86.487±85.88 222.470±0.00 152.273±152.11 57.256±0.00 26.643±41.45 1.179±0.00 1.363±1.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026289 ENSMUST00000027512 8.456±1.15 12.446±3.59 5.635±1.17 9.999±2.69 8.022±3.80 3.694±1.16 2.335±0.89 2.898±0.92 4.470±1.44 5.652±1.59 1.200±0.11 8.829±4.18 3.995±1.05 1.091±0.13
ENSMUST00000113186 4.141±0.87 4.042±0.00 7.235±1.95 6.628±2.59 3.264±0.44 4.968±1.27 1.701±0.04 5.278±0.79 6.894±2.02 4.527±1.37 1.377±0.35 6.302±2.55 8.784±1.63 1.934±0.62
ENSMUST00000113190 N/A N/A N/A 7.063±0.00 N/A N/A 6.698±0.64 N/A N/A N/A 5.393±0.99 N/A N/A N/A
ENSMUST00000127884 N/A N/A N/A N/A N/A N/A N/A N/A 1.543±0.07 N/A N/A N/A 1.938±0.00 N/A
ENSMUST00000129431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137638 N/A 9.413±1.23 N/A N/A 4.378±0.00 2.716±0.00 N/A N/A N/A N/A N/A 8.740±2.59 N/A N/A
ENSMUST00000139628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144047 N/A N/A N/A 25.071±0.00 N/A N/A N/A N/A N/A N/A N/A 19.749±0.00 25.975±0.15 3.695±0.00
ENSMUST00000151037 N/A N/A 2.226±0.00 3.997±0.61 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000056055 ENSMUST00000077772 N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A 0.063±0.00 N/A 0.057±0.01 0.460±0.00 N/A N/A
ENSMUST00000128761 0.290±0.00 0.202±0.06 N/A 0.133±0.00 0.132±0.08 0.184±0.01 0.132±0.04 0.217±0.00 0.094±0.04 0.248±0.06 0.051±0.03 0.235±0.08 0.059±0.00 N/A
ENSMUST00000130886 N/A 0.136±0.03 0.181±0.00 0.448±0.00 0.129±0.05 0.059±0.00 0.093±0.00 0.116±0.00 0.167±0.14 N/A 0.069±0.04 0.322±0.19 0.348±0.16 N/A
ENSMUST00000136708 N/A N/A N/A 1.161±0.00 N/A 0.176±0.00 0.090±0.00 N/A N/A N/A 0.089±0.00 0.346±0.00 0.488±0.00 N/A
ENSMUST00000144334 N/A 0.302±0.00 N/A N/A 0.089±0.00 N/A N/A N/A N/A 0.231±0.00 0.116±0.00 N/A N/A N/A
ENSMUST00000145385 N/A 0.185±0.05 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155393 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A
ENSMUST00000156381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177757 N/A 0.417±0.14 N/A N/A 0.142±0.01 N/A N/A N/A N/A N/A 0.041±0.00 0.169±0.07 N/A N/A
ENSMUSG00000087968 ENSMUST00000157343 4.288±2.50 1.741±0.71 0.999±0.73 0.744±0.44 4.369±2.15 1.862±0.52 17.559±8.63 4.051±1.56 0.996±0.81 4.068±1.59 0.297±0.00 2.404±1.49 1.026±0.68 2.555±0.99
ENSMUSG00000089281 ENSMUST00000158656 1.382±0.71 N/A 1.123±0.23 0.823±0.47 2.700±1.76 0.804±0.29 1.140±0.04 0.817±0.20 0.739±0.31 0.778±0.01 N/A 1.359±0.73 0.901±0.51 1.364±0.54

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