C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: haptoglobin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000257017 HP 9606 + 16:72054592-72061055 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000228226 HP-201 72054609-72060890 protein_coding
  ENST00000355906 HP-002 72054595-72061054 protein_coding
  ENST00000357763 HP-012 72054626-72061016 protein_coding
  ENST00000398131 HP-202 72054609-72061054 protein_coding
  ENST00000561927 HP-017 72056161-72058028 retained_intron
  ENST00000562488 HP-010 72054623-72058509 retained_intron
  ENST00000562526 HP-015 72054626-72061055 protein_coding
  ENST00000564499 HP-014 72054626-72060634 protein_coding
  ENST00000565574 HP-003 72054629-72061009 protein_coding
  ENST00000565807 HP-008 72054623-72057346 retained_intron
  ENST00000566821 HP-006 72054626-72061054 retained_intron
  ENST00000567185 HP-016 72056161-72060928 protein_coding
  ENST00000567612 HP-009 72056161-72061026 protein_coding
  ENST00000568417 HP-018 72054638-72059188 protein_coding
  ENST00000569639 HP-011 72054623-72059461 protein_coding
  ENST00000570083 HP-001 72054592-72061055 protein_coding
  ENST00000576168 HP-019 72056161-72059818 protein_coding
  ENST00000613898 HP-203 72054626-72061054 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228226ENST00000355906ENST00000561927ENST00000562488ENST00000562526ENST00000565574ENST00000566821ENST00000567185ENST00000567612ENST00000613898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228226 3.735±0.00 36.421±0.00 N/A 0.203±0.00 1.905±0.00 2.158±0.00 4.101±0.00 22.452±0.00 N/A 34.333±0.00 0.705±0.54 0.627±0.00 0.241±0.00 11.135±0.00
ENST00000355906 N/A N/A N/A N/A 3.771±0.00 N/A N/A 983.892±0.00 N/A N/A N/A N/A N/A N/A
ENST00000561927 N/A N/A N/A 0.319±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562488 N/A N/A 0.302±0.00 N/A N/A N/A 0.616±0.00 N/A N/A N/A N/A N/A 0.112±0.00 N/A
ENST00000562526 N/A N/A N/A 0.288±0.00 N/A N/A N/A N/A N/A N/A 0.414±0.00 N/A 0.111±0.00 N/A
ENST00000565574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.339±0.00 N/A
ENST00000566821 N/A N/A 0.234±0.00 0.077±0.02 N/A 0.188±0.00 0.275±0.19 N/A 0.302±0.00 N/A N/A 0.016±0.00 N/A N/A
ENST00000567185 1.450±0.00 N/A N/A N/A N/A 0.616±0.00 N/A N/A N/A N/A N/A 1.136±1.34 0.189±0.00 1.088±0.58
ENST00000567612 N/A N/A N/A 0.256±0.00 3.807±0.00 0.890±0.00 0.729±0.00 772.336±768.51 0.478±0.00 6.664±2.48 0.924±0.00 0.723±0.50 N/A 4.604±0.00
ENST00000613898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 0.372±0.20 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098E CIL_00098E_0001 VISTA 16:71920667-72521926
CIL_00098B CIL_00098B_0001 VISTA 16:71941307-72542883
CIL_0002Q2 CIL_0002Q2_0001 CGP 16:72044289-72094431

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002376 IEA immune system process
GO:0003824 IEA catalytic activity
GO:0004252 IEA serine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005576 NAS extracellular region
GO:0005615 IDA extracellular space
GO:0006508 IEA proteolysis
GO:0006952 TAS defense response
GO:0006953 IEA acute-phase response
GO:0010942 IDA positive regulation of cell death
GO:0016209 IEA antioxidant activity
GO:0030492 IDA hemoglobin binding
GO:0031838 IDA haptoglobin-hemoglobin complex
GO:0042542 IDA response to hydrogen peroxide
GO:0042742 IEA defense response to bacterium
GO:0051354 IDA negative regulation of oxidoreductase activity
GO:0070062 IDA extracellular vesicular exosome
GO:0071682 TAS endocytic vesicle lumen
GO:0072562 IDA blood microparticle
GO:2000296 IDA negative regulation of hydrogen peroxide catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051890 hp haptoglobin protein_coding Danio_rerio
ENSMUSG00000031722 Hp haptoglobin protein_coding Mus_musculus

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