C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulator of telomere elongation helicase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000258366 RTEL1 9606 + 20:63657810-63696253 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318100 RTEL1-201 63657810-63696253 protein_coding
  ENST00000356810 RTEL1-012 63658360-63674093 protein_coding
  ENST00000360203 RTEL1-011 63658312-63696253 protein_coding
  ENST00000370003 RTEL1-002 63689966-63696248 protein_coding
  ENST00000370018 RTEL1-001 63657810-63696253 protein_coding
  ENST00000425905 RTEL1-008 63688339-63690876 protein_coding
  ENST00000463361 RTEL1-013 63665066-63674052 processed_transcript
  ENST00000469728 RTEL1-009 63658294-63661332 processed_transcript
  ENST00000488316 RTEL1-007 63658630-63661857 processed_transcript
  ENST00000496816 RTEL1-003 63689846-63696245 nonsense_mediated_decay
  ENST00000508582 RTEL1-014 63658291-63695980 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLungOvaryPlacentaTestisENST00000356810ENST00000360203ENST00000508582
Transcript ID Breast Colon Lung Ovary Placenta Testis
ENST00000356810 6.641±0.00 N/A N/A 7.900±0.00 N/A 32.071±0.00
ENST00000360203 N/A 1.327±0.00 2.597±0.00 N/A 5.134±0.00 N/A
ENST00000508582 2.406±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003U1 CIL_0003U1_0001 CGP 20:63639705-63696253

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000723 ISS telomere maintenance
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004003 IMP:IEA ATP-dependent DNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IMP:IEA ATP binding
GO:0005634 ISS nucleus
GO:0006139 IEA nucleobase-containing compound metabolic process
GO:0006200 IEA ATP catabolic process
GO:0006281 IEA DNA repair
GO:0008026 IEA ATP-dependent helicase activity
GO:0010569 IMP regulation of double-strand break repair via homologous recombination
GO:0016787 IEA hydrolase activity
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0032508 IEA DNA duplex unwinding
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035074 rtel1 regulator of telomere elongation helicase 1 protein_coding Danio_rerio
ENSMUSG00000038685 Rtel1 regulator of telomere elongation helicase 1 protein_coding Mus_musculus

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