C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily V, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000262304 TRPV1 9606 - 17:3565444-3636249 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000572705 TRPV1-002 3565444-3609411 protein_coding
  ENST00000572919 TRPV1-001 3585149-3636249 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryENST00000572705ENST00000572919
Transcript ID Bladder Brain Breast Liver Muscle Ovary
ENST00000572705 N/A 0.873±0.00 N/A 0.991±0.00 0.394±0.00 1.204±0.00
ENST00000572919 0.796±0.00 1.200±0.00 0.161±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004888 ISS transmembrane signaling receptor activity
GO:0005216 IEA ion channel activity
GO:0005231 ISS excitatory extracellular ligand-gated ion channel activity
GO:0005262 TAS calcium channel activity
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 ISS ATP binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005975 IEA carbohydrate metabolic process
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007166 TAS cell surface receptor signaling pathway
GO:0007635 TAS chemosensory behavior
GO:0015278 ISS calcium-release channel activity
GO:0016021 IDA:IEA integral component of membrane
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0030054 IEA cell junction
GO:0031226 ISS intrinsic component of plasma membrane
GO:0034220 TAS ion transmembrane transport
GO:0042995 IEA cell projection
GO:0045211 ISS postsynaptic membrane
GO:0050955 IDA thermoception
GO:0051219 IPI phosphoprotein binding
GO:0055085 TAS transmembrane transport
GO:0070588 ISS calcium ion transmembrane transport
GO:0071312 ISS cellular response to alkaloid
GO:0071318 ISS cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059883 trpv1 transient receptor potential cation channel, subfamily V, member 1 protein_coding Danio_rerio
ENSMUSG00000005952 Trpv1 transient receptor potential cation channel, subfamily V, member 1 protein_coding Mus_musculus

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