C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 8A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000265241 RBM8A 9606 - 1:145921556-145927495 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369307 RBM8A-002 145925642-145927460 protein_coding
  ENST00000484825 RBM8A-004 145926482-145927495 retained_intron
  ENST00000498663 RBM8A-003 145926146-145927495 retained_intron
  ENST00000583313 RBM8A-001 145921556-145927495 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369307ENST00000583313
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369307 47.646±0.00 51.042±0.00 9.158±0.00 19.737±1.62 22.376±2.58 23.677±10.96 10.659±5.59 21.193±8.79 16.901±5.17 27.372±14.17 27.085±17.90 55.135±38.75 36.254±11.24 47.182±4.26
ENST00000583313 N/A 8.103±0.00 3.113±0.00 7.080±0.00 4.823±1.24 4.230±1.26 2.807±1.27 4.780±1.83 3.788±0.13 3.886±0.29 8.484±5.53 9.170±4.35 8.237±4.08 9.898±1.59

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IMP nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 IMP regulation of alternative mRNA splicing, via spliceosome
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0003729 NAS mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 NAS cytoplasm
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006406 TAS mRNA export from nucleus
GO:0006417 IEA regulation of translation
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0031124 TAS mRNA 3'-end processing
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016516 rbm8a RNA binding motif protein 8A protein_coding Danio_rerio
ENSMUSG00000038374 Rbm8a RNA binding motif protein 8a protein_coding Mus_musculus
ENSMUSG00000078184 B020018G12Rik RIKEN cDNA B020018G12 gene protein_coding Mus_musculus

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